Gene detail

Gene detail information of Glyur001043s00031418

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20280.1	4.00E-51	TBP-associated factor 11
NR	XP_004515436.1	4.05E-109	PREDICTED: transcription initiation factor TFIID subunit 11-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q9M565\|TAF11_ARATH	2.00E-63	Transcription initiation factor TFIID subunit 11
trEMBL	tr\|I3SWQ9\|I3SWQ9_MEDTR	2.00E-99	Uncharacterized protein {ECO:0000313\|EMBL:AFK44701.1}

Sequence

Transcript Sequence

>Glyur001043s00031418.1
CAAATCCAAAGGGGAGGAGATTCATTCATAACCTAGAGCTGATCATTTCCTTTCACTTCACAGTGGTTTGTGTATGCGACTAAGTTGGTTGGGAAGAGAATGAAGCAATCAAAGGATCCATTCGAAGCAGCATTCGAGGAATCACCACCGGAATCTCCGGTTGAGGCCGAGGCAGAGGCTGAAGCAGAGAACCCCAGTTCCAGTTTAGTGATTCCCCAACCCACCCACGCCAACACACACACCCTCACCCTCACTCAGGAAGAAGACGGTAACGGCAAAAAGGCAGTTACCACCACCAGTAACACCGCCACAACATCAGGCACCGCTAAGAACAAAGATGAAGAGGAGGAAGAAGAAGAGGACAACATGGATGTTGAGCTTGCCAAGTTCCCTAACGCCGGTGACCCTCACAAAATGGCCAAGATGCAGGCTATTTTGTCACAATTCACTGAAGAACAGATGAGCAGATACGAGTCCTTTCGGAGGGCTGGGTTCCAGAAAGCTAATATGAAAAGGTTATTGGCAAGCATCACTGGAACCCAGAAAATTTCTGTGCCAATCACAATTGTAGTATCAGGGATTTCAAAAATGTTTGTTGGTGAAGTTGTCGAAACAGCTAGAATAATTATGAAAGAAAGGAAGGAATCTGGACCAATCCGGCCATGTCATCTGAGAGAAGCATATAGACGACTAAAGCTTGAAGGAAAAGTCTTTAAGAGATCAGCCTCAAGGCTCTTCCGGTAAATGGACCAAATATGAATTTTGTGGATGATATCATTTGTTTGCAACAGTGGCTTGCAGGTAGAAAAAGTTTTTGTATTCAGTACCTTCATATTACTGCATCCCAATGTCCACTTTATCTATTTAATTGGAATGAGTGAATCAGTGTTAGTATTCAATGGACACAAGTATAGAATCTAACATCTTTTCTCTCCAGTTGTGTCAAAAATCATATTTTCCATGTACTAAAAAAAATTAAAATTTGCCGTAAAACAATGTTTTTACTGCATTATAATCTATTTTCTTTTCCACCATCAACCAGTAACCCTAGCAATTCTGAGTCCTACTCAATCAAAAATCCACTTCCAACAAGTTCAATGCATAAATATGTCACATATTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01043	39071	41493	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter

cellular_component
GO:0005634 nucleus

molecular_function
GO:0046982 protein heterodimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001043s00031418.1	PF04719.9	TAFII28	109	198	3.40E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.624
SRR1783600	control	26.700
SRR1783602	moderate drought stress	29.274
SRR1811619	moderate drought stress	29.419

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.736
DRR006520	Root Summer glycyrrhizin high producing strain	27.140
DRR006521	Root Winter glycyrrhizin high producing strain	50.790
DRR006522	Root Winter glycyrrhizin high producing strain	49.200
DRR006523	Root Summer glycyrrhizin low producing strain	18.647
DRR006524	Root Summer glycyrrhizin low producing strain	18.206
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.963
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.046

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.087
SRR2868004	Drought Stress (root)	20.430
SRR2967015	Control (root)	23.198

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.894
SRR9715740	Leaf	17.172
SRR9715741	Leaf	15.180
SRR9715739	Root	6.822
SRR9715742	Root	11.921
SRR9715743	Root	10.177

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.578
SRR8749028	MeJA induced 9h	26.609
SRR8749029	MeJA induced 9h	40.581
SRR8749030	Uninduced	14.583
SRR8749031	Uninduced	7.048
SRR8749032	Uninduced	12.877

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.327
SRR8400027	Control - Root	23.078