Gene detail

Gene detail information of Glyur001043s00031414

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13400.1	3.00E-139	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003539824.1	0	PREDICTED: uncharacterized protein LOC100802243 isoform X1 [Glycine max]
COG	YP_635420.1	3.00E-87	hypothetical protein MXAN_7307 [Myxococcus xanthus DK 1622]
trEMBL	tr\|I1LNX0\|I1LNX0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G01130.1}

Sequence

Transcript Sequence

>Glyur001043s00031414.1
AACTACGATACAAATAGGACTGTGTGCGTGAATTTGAATTGGAGAATATTGCCACCACCTCCTCCTCTTCCTGTTGAACCTCTTCAAGTTGAAAGGTCCCTTGTGTCTTCAAAACTGGCTCTCAAGTGCAGCATTCTCTCCGTCCCTCAGAACGCTGTCGTTTCCCGCCACGCCATCACCATGATGTCCTACTCCTCCTCCTCCGAAACCTCTACCCCTACCTTCCCCACACTCTCCATTCCCTTCTCTCACCTCAAAGATAAGAACNCCGACTTGTCGCTGAAGATCGAACAAGGGTTTGGACCTAATGGGCTCGGGATTCTATCAGTCACTGATGTCCCAGGATACTCTTCATTGCGCAGAAATCTTTTGCGTCTTGCACCAAGATTGGCAAATCTTCCTAAAGAAGTGAAGGAGGATCTTGAAGATCACGAGAGTAGGTATAATTTTGGTTGGAGTCATGGGAAAGAGAAACTTGAATCCGGGAAGCCTGATTTATTAAAAGGATCTTTCTATGCCAATCCCATACTTGATACACCTACAACAGATAAATCTTTGATACAACGGTATCCATCATATTGTGGATCAAATATATGGCCCAGAAGTGCATTACCAGAACTTGAATTGGCTTTCAAAGCACTTGGGAAGCTGATATTTGATGTTGGATTGATGTTGGCCTATCACTGCGANCAATATGTATCCAAAGGAATGAAAATTCACAAGGATGAAGGTCTGGAATCAATACTTCAACGNTCCCGCTGTCACAAAGGACGTTTGCTGTATTATTTTCCTGCACAACAGGGAACCCCAGGTGGTAACTCTATGTCTTCTTGGTGTGGATGGCACACAGACCATGGTTCACTGACAGGTCTGACTTGCGGTATGTTTACAAGAGATGGTGTAGAAATACCTTGCCCTGATAGTGCCGCTGGCCTCTATATTCAAACAAGAAATGATCAAATTGTCAAAGTTGTCTATGGAGAAGACGATATAGCTTACCAAATTGGTGAAACCGCTGAAATACTTTCTGGAGGTATTCTTCGTGCAACACCTCATTGTGTTCAGGCTCCAAAGGGGGAGGAGTCTTCTGGCATTGAACGCTCGACATTTGCATTATTCATGCAACCTGACTGGGATGAAAAACTCAGTTTTCCTGAGGAAGTTCACATTCATAAAGAGATTATTACTTCANATGCTGCCCTTACTTATGGAGAGTATTCAGAGATGCTGCTTGACAAATACTACTACAAAAAACAGTAACGTTTACATCTTAGACTTTTGANATTGATTGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01043	16767	25125	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001043s00031414.1	PF14226.1	DIOX_N	25	141	2.60E-06
Glyur001043s00031414.1	PF03171.15	2OG-FeII_Oxy	198	315	8.40E-05
Glyur001043s00031414.2	PF14226.1	DIOX_N	25	141	1.60E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.718
SRR1783600	control	0.758
SRR1783602	moderate drought stress	2.591
SRR1811619	moderate drought stress	2.301

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.809
DRR006520	Root Summer glycyrrhizin high producing strain	0.905
DRR006521	Root Winter glycyrrhizin high producing strain	3.358
DRR006522	Root Winter glycyrrhizin high producing strain	3.189
DRR006523	Root Summer glycyrrhizin low producing strain	3.637
DRR006524	Root Summer glycyrrhizin low producing strain	3.539
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.254
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.303

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.698
SRR2868004	Drought Stress (root)	8.405
SRR2967015	Control (root)	7.905

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.101
SRR9715740	Leaf	2.785
SRR9715741	Leaf	2.463
SRR9715739	Root	0.326
SRR9715742	Root	1.456
SRR9715743	Root	1.226

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.514
SRR8749028	MeJA induced 9h	8.909
SRR8749029	MeJA induced 9h	10.413
SRR8749030	Uninduced	21.783
SRR8749031	Uninduced	28.494
SRR8749032	Uninduced	27.093

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.722
SRR8400027	Control - Root	4.169