Gene detail information of Glyur001043s00031412 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G08030.1 | 7.00E-145 | Protein of unknown function, DUF642 |
| NR | AES87990.2 | 0 | DUF642 family protein [Medicago truncatula] |
| trEMBL | tr|G7JUL4|G7JUL4_MEDTR | 0 | DUF642 family protein {ECO:0000313|EMBL:AES87990.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01043 | 3202 | 5654 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001043s00031412.1 | PF04862.7 | DUF642 | 31 | 185 | 9.40E-59 |
| Glyur001043s00031412.1 | PF04862.7 | DUF642 | 196 | 363 | 1.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.066 |
| SRR1783600 | control | 0.040 |
| SRR1783602 | moderate drought stress | 0.182 |
| SRR1811619 | moderate drought stress | 0.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.770 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.983 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.031 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.022 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 59.464 |
| SRR2868004 | Drought Stress (root) | 20.655 |
| SRR2967015 | Control (root) | 31.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.862 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.059 |
| SRR9715739 | Root | 0.123 |
| SRR9715742 | Root | 0.108 |
| SRR9715743 | Root | 0.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 55.473 |
| SRR8749028 | MeJA induced 9h | 6.545 |
| SRR8749029 | MeJA induced 9h | 19.707 |
| SRR8749030 | Uninduced | 0.473 |
| SRR8749031 | Uninduced | 0.576 |
| SRR8749032 | Uninduced | 1.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.674 |
| SRR8400027 | Control - Root | 1.129 |