Gene detail

Gene detail information of Glyur001042s00036968

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03910.1	6.00E-174	ABC2 homolog 12
NR	KEH42013.1	0	ABC transporter of the protein [Medicago truncatula]
COG	NP_440893.1	3.00E-95	ABC transporter [Synechocystis sp. PCC 6803]
Swissprot	tr\|Q9LZB8\|AB29B_ARATH	0	ABC transporter B family member 29, chloroplastic (Precursor)
trEMBL	tr\|A0A072VKR0\|A0A072VKR0_MEDTR	0	ABC transporter of the protein {ECO:0000313\|EMBL:KEH42013.1}

Sequence

Transcript Sequence

>Glyur001042s00036968.1
CCTTCCTCTGAAAAAGTGTCTTTAATTGGTATGGATAGTCGAGATAGATCGATAAGGAGTAAGATGGAAAGATGGCGCATTAAATTGACGAATAAATAAAAACGTACTTAAAAGGGAAAATGGAAATGCGACAATTCGTATGAATTGAAGATCAAATTGGACCGACTCTATTTAATGAAATGATCCCCTCAATTGAATCCACGTGCTTATATTATTATGTAGAAAGAACCATGTTTTATAATCATCACCATCATGATCAATGTTTCGATTGCAAACCACAACACCACCATTCCCAATTCAATTTCCTCCTCATTGAGAAACAGAATGCCAATCTCATCCTCACTCTCATCACCATCGATTCTGCCAAACCTAAACCCCCCTCGCCTTCTCCAATTCCGAACCAAATTCCAAACCAAACAACAACAACAACAATACCTTCTCCCGAAGCTGAGAATCCGAAGCTCAACCCGAAGCACTCACACGTTGCAGTTCCTGAAACCGTACCTAGTTTCACAACACAAACCAATCCTCTGCGGTTGGCTATGCAGCGCCGTCTCCGTCTACTCACTCTCCAACCTCCTATCGAAATTCTCCGCCATCACCACCGCCACAACCGCCGTCGACGCCGCACAGGGATTCGCTCTCGGTGGTTTGGTCCTCACGCGCTTGGTCGCCACGTACGCGCAGCACTCGCTCCTGTGGGAGGCTTCACTCAATGCCGTGTACAACCTTCGCGCTCACGTTTTTGAGCGTGTTCTACATAGGGAACTCGCATATTTCGAAGCAAACGACGCCGTTTCAGCTGGCGACATTGCGTATCGAATCACCGCTGAAGCTTCCGACCTTGGNCTCACCTTATATGCACTTCTTAATACCATAGTACCCAGTACCCTGCAGTTGTCGGCAATGATAATGCAGATGTTGGTTATAAGTCCTGTCCTTTCTTTGATTTCAGCCATAGTTATTCCTTGCATGGTTCTAGTTGTTGCCTTTCTTGGTCAGGAACTTCGTAAGATATCTAAACAGTCACATATTAGCATTGCTGCTCTCTCAGCATATCTGAATGAGGTGCTGCCCGCGATTCTCTTTGTGAAAGCAAACAATGCTGAGTTGTCTGAGTGTGCCAGGTTTAAGAGACTGGCTCTGGTGGACTGTTCTGCAAAGCTGAAGAAGAAAAGGATGAAAGCAGTCATTCCTCAGGTTATACAAGCTATTTATTTTGGAGTCATTTCCATACTTTGCGCTGGTTCAGTGGTGATTTCGAGAGGTTCATTTGATCNGTGTAGCTTGGTCTCATTCGTCACATCGTTGCTTTTTTTGATTGAGCCTATCCAGGATGTNGCGAAAGCTTACAATGAATGGAGGCAGGGAGAACCAGCTGTTGAACGCTTGGTTGCTATGACCAAGTTCAAAAATAAGGTNGTTGAGAAACCAGATGCTGTTCATTTGGACCATGTTATAGGGGACCTGAAATTCTGTGATGTCTCCTTTAAGTATAATGATGACATGCCTCTCATTTTAAATGGATTGGATCTTCACGTAAGGACTGGAGAGATAGTTGCTATCGTGGGTCCATCTGGTGGAGGGAAAACAACACTTGTAAAACTGTTGCTTCGTCTTTATGATCCTATATCTGGCACAGTTGCTGAAAATATCGGTTATAGGGATCTGACAACAAAAATTGACATGGAGAGGGTGAAGCGTGTAGCTCAAACTGCTCATGCAGATGAGTTTATTAGAAAGCTTCCAGAAGGATACAAAACCAATATTGGACCAAGGGGCTCAACTTTAAGTGGAGGACAGAGGCAAAGGCTGGCTATTGCACGAGCTCTCTATCAAAATTCTTCTATATTAATTCTGGATGAGGCAACTTCTGCCTTAGATAGTAAATCTGAGTTATTAGTGAGACAAGCTGTGGAGCGTTTGATGGAAAATCGCACGGTGCTTGTGATCTCCCATCGCTTGGAAACAGTTCTGATGGCTAAACGAATATTCCTTTTGGATAATGGGAAGCTAGAAGAGATGCCTCGATCAACTATGTTGAATGGTCACATGGATTCATTGCTATCATCTGGGCGTCTTGTTTGAATAATATTTCTCGTAAGGGCAATTATTATTATTATATATTACATAGGTGGATTCTGTTTGCATATTTATTGTAAGTGTGATATATATTCACATCTAGTTTCAAAAGAATGGACTCTCTCCCCCTCTATCCCTTTGCTTTCTATTCCTTGTATTTTTGGAGATTCTATTGTACATTCTTCTGTAATCACGTGTTGATTTTTAATAAAGAATCATACTATTTTAATTTATGCCCCCTTCTAATTCTCGGGTATTAAAGACTACAAATACTAAGCTCTGCCAACTGAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01042	82574	90390	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001042s00036968.1	PF00664.18	ABC_membrane	107	359	4.00E-15
Glyur001042s00036968.1	PF00005.22	ABC_tran	423	541	5.00E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.148
SRR1783600	control	3.144
SRR1783602	moderate drought stress	2.038
SRR1811619	moderate drought stress	2.094

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.224
DRR006520	Root Summer glycyrrhizin high producing strain	3.189
DRR006521	Root Winter glycyrrhizin high producing strain	5.810
DRR006522	Root Winter glycyrrhizin high producing strain	5.849
DRR006523	Root Summer glycyrrhizin low producing strain	5.394
DRR006524	Root Summer glycyrrhizin low producing strain	5.250
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.074
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.996

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.287
SRR2868004	Drought Stress (root)	3.692
SRR2967015	Control (root)	4.087

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.053
SRR9715740	Leaf	2.604
SRR9715741	Leaf	8.128
SRR9715739	Root	2.505
SRR9715742	Root	3.617
SRR9715743	Root	2.963

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.578
SRR8749028	MeJA induced 9h	8.341
SRR8749029	MeJA induced 9h	7.416
SRR8749030	Uninduced	17.299
SRR8749031	Uninduced	18.275
SRR8749032	Uninduced	15.638

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.082
SRR8400027	Control - Root	3.310