Gene detail

Gene detail information of Glyur001042s00036962

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52720.1	6.00E-35	alpha carbonic anhydrase 1
NR	XP_007144395.1	3.82E-101	hypothetical protein PHAVU_007G152600g [Phaseolus vulgaris]
COG	YP_006413853.1	2.00E-24	carbonic anhydrase [Thiocystis violascens DSM 198]
Swissprot	tr\|O04846\|ATCA1_ARATH	5.00E-41	Alpha carbonic anhydrase 1, chloroplastic (Precursor)
trEMBL	tr\|V7BEV9\|V7BEV9_PHAVU	1.00E-101	Uncharacterized protein {ECO:0000313\|EMBL:ESW16389.1}

Sequence

Transcript Sequence

>Glyur001042s00036962.1
TGTTGCGGATCCACTGATCTCGTAAGTATAACCACCATCACCAAATTATCAATCACCGCCCAAACTTTAGCACATCTCCAACAACAACAAAGTGCATAACAGTGATTATAAATTGGAGAAGAACACACAACACAACCATCACTACAATATCACATTCCACACATATATATATTAGTATATTTTACATTATATTATATAAAGCTGAGAGAATAATACAAGCTCTCTCAGATCAAAGCATACATAGCTAGCTAGGTATCCATAAAATGGCCCTGCAGATTTACTTCTCAATCATTTCCATAGCAGTTTTGGCTCTATGCACTTCTGCAGATTACTATTCGGCTAATTTTAGTTATAGTGGTGCAAATGGACCTGAGAAATGGGGAAGCTTGAGTCCATCTTTCGCAGCGTGCTCAAATGGGAAAGCTCAGAGTCCTGTGGACCTTGCTTGGACCGATATTGTCATGAACCAGCAGTTGCAATCCTTAGACAGACACTACCTTCCTACAAATGCCACTCTGGTTAACAACAAATTCAACCTTGGGGTGCATTTTGAAGGAAAAGTGGGAGATATTAATATAAATGGAAAAAACTACTCCTTGAAACANCTACACTGGCACTCTCCTGCAGAGCACCGGGCTAATGGTCGCATACACGAGGCTGAGCTCCATCTAGTTCACCTGACCGAAGATTATAACAACACAGCAGTTGTGGCAGTGCTCTACAACTTGGGTGATCCCGATCCTCTCATCTCCAAGGTGAGGACACTCTCCAAGAAACAATTGGAGCTCCTAAAGGCACCGTTGGGTCCAGAGTTCCAACACAACGCAAGGCCTCTTCAGCAACTAAATGGTCGCAAAATTGAGATGTACTCCAACCAGAGACAGGGGAGGACTCCAACATCCTCAACCAAATATCATTAACAAATTTCCTCTTCATGTCTGCCTGGTTTTGCTTAATTATTGGTAGATGATATGATAGTGTTTACGCAGGGATGTTAGAACATTATATCTAGTCTAGTCTAGGGAGAGATGCAGGCATAAAAAAAATGGAGAATTCTCTGTTCTGAGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01042	6711	19963	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01674	cah	EC:4.2.1.1	Nitrogen metabolism	map00910

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001042s00036962.1	PF00194.16	Carb_anhydrase	29	146	2.90E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.102
SRR1783600	control	0.103
SRR1783602	moderate drought stress	3.439
SRR1811619	moderate drought stress	3.426

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.690
DRR006520	Root Summer glycyrrhizin high producing strain	7.909
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	8.529
DRR006524	Root Summer glycyrrhizin low producing strain	7.841
DRR006525	Leaf Summer glycyrrhizin high producing strain	48.295
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.490

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.872
SRR2868004	Drought Stress (root)	0.768
SRR2967015	Control (root)	0.303

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	75.529
SRR9715740	Leaf	77.298
SRR9715741	Leaf	84.653
SRR9715739	Root	1.547
SRR9715742	Root	8.061
SRR9715743	Root	6.973

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.133
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.103

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.202
SRR8400027	Control - Root	1.948