Gene detail

Gene detail information of Glyur001041s00027456

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76160.1	0	SKU5 similar 5
NR	KEH40258.1	0	multi-copper oxidase-like protein [Medicago truncatula]
COG	YP_003290660.1	9.00E-15	multicopper oxidase type 3 [Rhodothermus marinus DSM 4252]
Swissprot	tr\|Q00624\|ASOL_BRANA	2.00E-171	L-ascorbate oxidase homolog (Precursor)
trEMBL	tr\|A0A072VFN2\|A0A072VFN2_MEDTR	0	Multi-copper oxidase-like protein {ECO:0000313\|EMBL:KEH40258.1}

Sequence

Transcript Sequence

>Glyur001041s00027456.1
CCCAAGTTCACTTCAACCTTCCCTCCGTTTCATTTTACTACTACCCTACCCTTTAGTTTACGGCTATATTGATTGATCTTATCATACTCTGTCTGTACCGCACTTAAATTTAAACGTGTGAGTGTCCATCGTTGGCCATTTCTCACACCTCCCTCTCCCCTCCCCTTGTACGCTTCTCTCTCTTCACCTCGCTCACTCACCACATTCCACATTCCACATTCCACAACCAATTAGAGTAAGTATCTCTGCAGCCAGCTACAAACATCAGCCCCTTGCTATTAGAGATCGAGGNAGTGAGTGTGTAAATGGCGGTCAAGTTAGCCGCTGCTGCTGTGGTGTTATGCATAATTTCCCTTTTTGCCATAACTACTACCACCGTTGCTGAAGATCCGTACAGGTTCTTCAACTGGAATGTTACTTACGGCGACATTTATCCACTCGGTCTTCGCCAACGGGGAATACTTATCAATGGGCAGTTCCCAGGTCCAGACATTCATTCTGTTACAAACGACAACCTCATTATCAATGTCTTCAACAGCCTGGACGAGCCCTTTCTCCTCTCCTGGAACGGGGTGCAGCAAAGAAGGAACTCATACGAAGATGGGGTATTGGGAACAACGTGCCCCATCCCTCCGGGAAAGAACTTTACATACATACTTCAAGTGAAGGATCAAATTGGGAGCTTCTACTATTTCCCATCTCTCGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGCATTAGGATCCTCAGCAGGCCACGAATTCCGGTTCCCTTCGATGATCCCGCCGGTGATTACACCGTTCTCATTGGAGATTGGTACAAATCCAACCACACGGATTTGAAGGCCCAACTTGATAGCGGTAAGAAGTTGCCTTTCCCTGATGGAATCCTCATCAATGGTCGTGGGCCTGGCGGAGCATCTTTCAATGTGGAACAAGGAAAGACTTACAGGCTTAGAATATCAAATGTGGGGTTGGAGAATTCGCTAAACTTTCGGATACAGAACCACAAATTAAAGCTGGTAGAAGTGGAAGGAACNCACACCCTTCAAACAACCTACTCCTCCCTTGACGTCCACGTGGGGCAATCTTACTCGGTTCTAGTAACCGCGGATCAACCTGCTCAAGACTATTACATTGTGGTTTCCACCCGATTCACCTCTACGGTGCTCACCACCACCGGAGTTCTTCGCTATAGCAACTCTGCAGGCCCAGTATCAGGCCCACCCCCTGGCTCGTACCATTACGGGCTCATAAACACAACGAGGACGATCGTACTGTCAAGTTCAGCTGGTCAAGTGAATGGCAAGCAAAGATACGCAATTAACAGCGTGTCTTATGTTGCCCCAGACACTCCTCTTAAGCTCGCTGACTTCTTCAAGATCTCGGGTGTTTACCGTGTTGGAAGCATATCNGATAGACCCACCGGTGGCGGCGTATACCTTGACACGTCTGTTATGCAAACCGACTANCGAACATTTGTGGAGATTGTCTTCCAAAACGACGAAGACATCATTCAGAGCTATCATCTCGATGGCTACTCCTTCTTTGTGGTATATCCCAAGTCATGGACTGCTATATATGTTGCGTTGGACAATGTGGGAATGTGGAACTTGAGGTCTGAATTTTGGGCACGACAATACCTTGGCCAACAGTTCTATATGCGTGTTTATACGACGTCTACCTCACTCAGAGACGAATACCCTATTCCAAAGAATGCACTACTTTGTGGTAGGGCAAGTGGGAGACATACTCGACCCCTTTGAGCCAGAAAGCGCATGAACAAGGATCCCACACCACACTTTAGCAGGGAACAAAGGCCTTCACTATAGCCTTTAATTAGAATATGAAAAGCAGTTAGCTCATCTGCTTTTGATTTTGATTTTATTGTTTGGTGCTTAATTTTGGTAATTTACAATGTGCTGGTATGATTGATATGTATGATTCCACGATAAATGATCTCAGCTCGAGGTCACATTCTTTCTCATAAGCAAACAGAAACAATATTTTAGTCCCTTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01041	78900	85259	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001041s00027456.1	PF07732.10	Cu-oxidase_3	37	150	1.20E-33
Glyur001041s00027456.1	PF00394.17	Cu-oxidase	163	299	4.00E-43
Glyur001041s00027456.1	PF07731.9	Cu-oxidase_2	350	417	1.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	94.102
SRR1783600	control	93.781
SRR1783602	moderate drought stress	29.774
SRR1811619	moderate drought stress	28.744

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.567
DRR006520	Root Summer glycyrrhizin high producing strain	41.846
DRR006521	Root Winter glycyrrhizin high producing strain	0.224
DRR006522	Root Winter glycyrrhizin high producing strain	0.269
DRR006523	Root Summer glycyrrhizin low producing strain	53.627
DRR006524	Root Summer glycyrrhizin low producing strain	54.531
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.185
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.344

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.721
SRR2868004	Drought Stress (root)	17.238
SRR2967015	Control (root)	16.878

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.295
SRR9715740	Leaf	1.236
SRR9715741	Leaf	3.684
SRR9715739	Root	30.691
SRR9715742	Root	30.598
SRR9715743	Root	30.013

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	74.201
SRR8749028	MeJA induced 9h	36.483
SRR8749029	MeJA induced 9h	58.238
SRR8749030	Uninduced	6.329
SRR8749031	Uninduced	0.353
SRR8749032	Uninduced	4.604

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.533
SRR8400027	Control - Root	58.968