Gene detail

Gene detail information of Glyur001041s00027454.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G20510.1	0	OPC-8:0 CoA ligase1
NR	XP_003545004.1	0	PREDICTED: 4-coumarate--CoA ligase-like 5-like [Glycine max]
COG	YP_007042205.1	1.00E-101	putative 4-coumarate-CoA ligase 3 [Saccharothrix espanaensis DSM 44229]
Swissprot	tr\|Q84P21\|4CLL5_ARATH	0	4-coumarate--CoA ligase-like 5
trEMBL	tr\|I1MBZ0\|I1MBZ0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G39840.1}

Sequence

Transcript Sequence

>Glyur001041s00027454.1
TGGCTGTCTCATGAATCATGGGGATGTTATAATACCAGTACTAGAGAATATACCTGCATTAGCAGTGGATAGAATACAATAGAAATTGGAAAAGTAAAGTAACGTACGGATAGAGAGAGAGAGAGATGGAGGAGCAAGAGCAGGGTAGGAGGAATGGGATCGATTCAAGGAGTGGATTCTGCAGTTCGAATTCAGTGTTCTACAGCAAGCGGAAGCCCATCTCACTCCCTCCGAAGCAGTCGTTAGACGTGACCACCTTCATCTCCTCCCACGCNCACCACGGCAACATCGCCTTCATCGACGCCGCCACCGGCCTCCACTTCACCTACCAGCAATTCTGGCGAGCCGTGGACGCCGTCGCCGCCTCTCTCTCCCTCGACTCCGCCATCCGGAAGGGCGACGTCGTCCTCCTCCTCTCCCCCAACTCCGTCTACTTCCCCGTTGTGTGCCTCGCCGTCATGTCCCTCGGCGCCGTCATCACCACCACCAACCCCCTCAACACCACCCGCGAAATCGCCAAGCAGATCGCCGATTCCAAACCCGTCATCGCCTTCACAACCCCCTCGCTCGTTCCCAAGATCGCGGGGGCATCACCCACCCTCCCGATCGTTCTCATGGAGTCGAAGTCAGGCCCGGTTTCTCCTCCGGGGGCTAAAATCGCNACCACACTGGAGGAGATGATGAGGAAGGAAGCGCGTGGAGTNATGCCGATGGTGGAGCAGGAGGACACGGCGACGCTGCTGTACTCGTCAGGCACCACGGGACCCAGCAAAGGCGTGATCTCGTCCCACAGGAACCTCATAGCCATGGTACAGATGGTATTGGGCCGCTTCGACACGGAAGAGACACAGACGTTCATATGCACGGTGCCCATGTTCCACATATACGGCCTGGCGGTGTTCGCGACGGGGCTCCTGGCCTCCGGGTCAACCATCGTGCTGCTGTCGAGGTACGAGATGCACGACATGCTATCCGCCATCGACAAGTTCAGGGCCACCTTCCTCCCCCTGGTGCCGCCCATCCTGGTCGCCATGCTCAACAACGCGGATGCCATCAGGGCAAAGTACAACCTCGGCTCCCTCCACACGGTTCTCTCCGGTGGGGCCCCACTCAGCAAAGAGGTCACCGAGGGCTTTGTGGAAAAGTACCCNAACGTCACCATCCTTCAGGGCTACGGCCTCACCGAATCCTCCGGGGTTGGGGCCTCCACCGACTCCTTGGACGAGAGCCGCCGCTACGGCACGGCGGGGCTTCTCTCCCCTTCCACCGAGGCCATGATCGTCGACCCTGAAACCGCTCGACCACTTCCCGTCAACCACACCGGTGAACTCTGGCTCCGGGGCCCCACCATCATGAAAGGTTATTTCAGTAACGAGGAGGCAACTACGTCAACCCTGAACTCAGAGGGATGGTTAAGAACAGGGGATGTCTGCTATATTGATAGTGATGGATTCTTATTTATTGTTGATCGGCTGAAAGAGCTGATTAAGTACAAGGGATATCAGGTCCCTCCAGCAGAACTAGAGGCATTGTTGCTGACTCATCCTGCTATTTTAGATGCTGCTGTCATACCGTATCCAGATAAGGAAGCTGGGCAAATTCCATTGGCGTATGTGGTGAGGAAGGCTGGAAGTAGCATATCAGAGAACCAAGTTATGGATTTTGTTGCAGGACAGATGCTTGATAGTTGGTACCTGGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01041	61346	64057	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10526	OPCL1	EC:6.2.1.-	alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001041s00027454.1	PF00501.23	AMP-binding	51	456	6.20E-95
Glyur001041s00027454.1	PF13193.1	AMP-binding_C	465	517	3.70E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	97.842
SRR1783600	control	98.201
SRR1783602	moderate drought stress	167.270
SRR1811619	moderate drought stress	167.424

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	129.429
DRR006520	Root Summer glycyrrhizin high producing strain	127.933
DRR006521	Root Winter glycyrrhizin high producing strain	35.873
DRR006522	Root Winter glycyrrhizin high producing strain	35.315
DRR006523	Root Summer glycyrrhizin low producing strain	142.172
DRR006524	Root Summer glycyrrhizin low producing strain	141.548
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.820
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.743

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	96.707
SRR2868004	Drought Stress (root)	146.657
SRR2967015	Control (root)	167.003

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	310.297
SRR9715740	Leaf	85.331
SRR9715741	Leaf	331.839
SRR9715739	Root	246.214
SRR9715742	Root	454.203
SRR9715743	Root	393.805

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	81.344
SRR8749028	MeJA induced 9h	36.957
SRR8749029	MeJA induced 9h	59.958
SRR8749030	Uninduced	60.792
SRR8749031	Uninduced	36.962
SRR8749032	Uninduced	57.505

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	139.993
SRR8400027	Control - Root	120.811