Gene detail information of Glyur001041s00027448 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15290.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | KHN38001.1 | 0 | Protein KIAA0664-like protein [Glycine soja] |
| COG | YP_003573719.1 | 1.00E-14 | hypothetical protein PRU_0335 [Prevotella ruminicola 23] |
| Swissprot | tr|F4J5S1|CLU_ARATH | 3.00E-46 | Clustered mitochondria protein |
| trEMBL | tr|K7KZC4|K7KZC4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G03250.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01041 | 18452 | 32475 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001041s00027448.1 | PF15044.1 | CLU_N | 48 | 103 | 6.90E-11 |
| Glyur001041s00027448.1 | PF12807.2 | eIF3_p135 | 648 | 783 | 2.40E-30 |
| Glyur001041s00027448.1 | PF13424.1 | TPR_12 | 864 | 941 | 1.70E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 150.928 |
| SRR1783600 | control | 151.090 |
| SRR1783602 | moderate drought stress | 304.220 |
| SRR1811619 | moderate drought stress | 302.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 149.595 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 147.899 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.990 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.092 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 85.705 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 85.476 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 108.005 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 107.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 69.345 |
| SRR2868004 | Drought Stress (root) | 90.056 |
| SRR2967015 | Control (root) | 63.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 123.697 |
| SRR9715740 | Leaf | 142.990 |
| SRR9715741 | Leaf | 106.095 |
| SRR9715739 | Root | 11.053 |
| SRR9715742 | Root | 137.998 |
| SRR9715743 | Root | 120.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.361 |
| SRR8749028 | MeJA induced 9h | 2.064 |
| SRR8749029 | MeJA induced 9h | 1.472 |
| SRR8749030 | Uninduced | 3.973 |
| SRR8749031 | Uninduced | 1.925 |
| SRR8749032 | Uninduced | 2.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 177.081 |
| SRR8400027 | Control - Root | 210.804 |