Gene detail

Gene detail information of Glyur001040s00028721

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43970.1	3.00E-100	RNA-binding protein
NR	XP_003554803.1	0	PREDICTED: la-related protein 6-like isoform 1 [Glycine max]
Swissprot	tr\|O80567\|LRP6B_ARATH	7.00E-121	La-related protein 6B
trEMBL	tr\|I1NCU5\|I1NCU5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G45320.3}

Sequence

Transcript Sequence

>Glyur001040s00028721.1
GTCAAATTTTCGTTCATTCTCTTNTTCCGTCCATTTTACCCTCCAAAACAGAACTCATCCCGCACTGCGCGCAGTTGCGCACCCCGTTTGATGGGCCGATGTGCTTTTGGGGCCTGCGTCCATCTTCGTCAATGAAGAGTCATCAACNAATCCATCTTATCTATCTATAAATAATCCACTGCAGGGAACCCGTGAAAAATTGAGAATTTTTCTCCGTCGACACCGATTTAGGTGTGAAAAATATCTATATCTAGTAACGATCTTCCTCTCACTCACTGATATTTCTCTCGGCTGCAGCCAGGCTCAAAAATCTCCAACCTACTACATCCTATCCCAAGTAACTGGAAAAAGTGATCTAAACAGTAGCAGCTAGATCGTCGAACAAGAAACGAAAACATAAACACTCGATAATGGCTCAAGAGTCACTGTCAGAAACTCCAGATGTGTCGTCTTCTTCGTCTACTGCTCAATCGCAGCCAGATCCATATCTTTCCAGGAGCGTTTCTTTTAGCCGGCTCAACGCACAGGCACCAGAATTTGTGCCCACTCGAGCCGCTCCACGGACCGATTTGCAACAACCTAGGCTCGTAGTACCACCGCCNCCTCCTCCTCCTCCTCCGGCATCAGGTATGGTACATGTTTACTCACCACCCCCAACTTCGCCGTTCCATATACCAATTCAAGGTCACGTGCCAGTCGCCAGTCAAGTCGTCAATCACCGCCACCATCTTGCCCATCAGCACCCCGTTCCGGTTCACTACCGGTCTCATCATCAACCACATCAATATTATGTTAGCTCTGATTCGGGTGTGCAGCAAGTTCNGCAGTCTCAAGTTGAGCCAGATCATACTCCTCCTTCCAAAAGCAAGCTCTCCGAAGAAGCTAGTCAGAAAATTTTGAATCAGGTGGAGTATTATTTCAGTGATTTAAACTTAGCTACTACCGATCATTTGATGAGGTTCATCAGCAAAGATCCGGAAGGTTTTGTGCCAATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTCATAAACAGTCANTCCCAACTTGCAACTGTTTTGAGGAACTCATCAAAGCTTGTAGTTAGTGAAGATGGAAAGAAAATCAAACGCCAGTATCCCTTGACTGAGTCTGATATAGAAGAGCTACAATCTCGCATTGTTGTAGCTGAAAACCTACCCGAGGATCATTGCCATCAGAATCTTATGAAGGTTTTTTCTTCTGTTGGGAGTGTGAAAACTATCCGTACCTGTCCACCTCAAACATCCAATAATGGGAATTCGTCTGCTTCAAGATTGGGAAAAATTGATGGCATGCATTTATCCAACAAGTTGCATGCATTTGTTGAATATGAATCTGTTGAGCTGGCTGAGAGAGCGGTCGCTGAGCTAAATGATGAGGGAAACTGGCGGAGTGGCCTCCGGGTTCGTCTAATGCTTAGACGCATGCCAAAACCTGCTCAAGGACGGGGAAAAAAGGGACTTGATGTTGAAGTTAGCTGTGAAGAGGATTATGCTTCTGTGCCTGAGCCACTGGCAAATGAGAAACAATTAGAAGATGCTTCCTTTCCTGATACTCAGCTGCATGAACATGTGGGAGAAGAGCACGGTTATGACAAAGAGAGTGGGCAGAGGAAAGGCCGTAGCCGGGGCCGGGCTAAGGGACGTGGCCGAATTCATGGTCATCAAAATAATCGTATCCCTCACTTGGGAACCCCAACTTCAAATAATTCAGTTTTCACTGATCAAGTGGTAGCCAAGCAACCTCCGGGGCCCCGCATGCCAGATGGTACAAGGGGATTTTCAATGGGTCGGGGGAAACCGGTAGCTGTTAATATAGCATAATATTGTTTAATCAGATGCATAAACAAGTTTGTAATTGTGCTTGTAAGAGTACACGTTTGTGATGGAACGGTGATTGTGATAGTACTAGTACGAGGGCTGTCTGGGTGGGGCAATTGTCGAAGTTACTATTTTTTTTTTCTTAAGGTTTTTTTTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01040	1330	9158	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006396 RNA processing

cellular_component

GO:0005634 nucleus

GO:0030529 intracellular ribonucleoprotein complex

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001040s00028721.1	PF05383.12	La	162	221	2.40E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	153.125
SRR1783600	control	153.365
SRR1783602	moderate drought stress	211.922
SRR1811619	moderate drought stress	210.894

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	194.612
DRR006520	Root Summer glycyrrhizin high producing strain	191.621
DRR006521	Root Winter glycyrrhizin high producing strain	112.755
DRR006522	Root Winter glycyrrhizin high producing strain	109.859
DRR006523	Root Summer glycyrrhizin low producing strain	143.815
DRR006524	Root Summer glycyrrhizin low producing strain	143.750
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.986
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.379

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	62.985
SRR2868004	Drought Stress (root)	61.262
SRR2967015	Control (root)	81.043

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.049
SRR9715740	Leaf	49.825
SRR9715741	Leaf	49.630
SRR9715739	Root	76.422
SRR9715742	Root	103.646
SRR9715743	Root	98.673

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	97.213
SRR8749028	MeJA induced 9h	85.486
SRR8749029	MeJA induced 9h	72.653
SRR8749030	Uninduced	51.539
SRR8749031	Uninduced	51.450
SRR8749032	Uninduced	57.708

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	91.320
SRR8400027	Control - Root	80.038