Gene detail

Gene detail information of Glyur001039s00031430

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13010.1	4.00E-131	Oxidoreductase, zinc-binding dehydrogenase family protein
NR	AFK36431.1	0	unknown [Lotus japonicus]
COG	YP_007081531.1	8.00E-54	Zn-dependent oxidoreductase [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q9SV68\|QORH_ARATH	9.00E-164	Putative quinone-oxidoreductase homolog, chloroplastic
trEMBL	tr\|I3S839\|I3S839_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK36431.1}

Sequence

Transcript Sequence

>Glyur001039s00031430.1
GATAAAACGAAATTTACAATAAAATAAGCATATAATAAAAAAAATAAATTTGTTAAATATAAATGCTAATTAATAAAAAATACAAGTCAAAATATTTTCATGTATAAAGTGAGAGAGTGGTAAACACACAACAACAAATATTGCGCAATAGTTTAGNGGGTGCTGTGGCGAAGAATATGGCTCCGAATATGATGCAAGCGCTTCAGTACGATTCCTATGGTGGAGGTGCCGCTGGATTAAAGCATGTTCAAGTTCCTGTTCCCACTCCAAAGAGCAATGAGGTTTTATTGAAACTGGAAGCAACTAGCATAAACCCAGTTGATTGGAAGATGCAGAAGGGTGTTATGCGCCCTTTATTTCTCCCTAGAAGCTTTCCCCACATACCTTGTACTGATGTAGCAGGAGAGATAGTAGAGATTGGACCACAAGTCAAAGATTTCAAAGTTGGCGACAAAGTTGTTGCTAGGCTCTCAAATCAATATGGAGGTGGACTAGCCGAGTTTGCAGTGGCTAGTGAGAGCTTAACAGCTGCCAGACCATCTGAAGTCTCAGCTGCTGAAGGCTCAGGTTTACCTATTGCNGGTCTCACAGCTNGNGATGGCCTCNCTCAAATTGCAGGAATCAAGCTTGATGGGACAGGCCAGCCCAAGAANGTTTTAGTAACTGCAGCTTCAGGTGGTGTAGGTTCNTATGCTGTTCAACTTGCTAAACTTGGGAACCACCATGTGACAGCCACTTGTGGGGCTCGNAACATTGACCTTGTTAAGGGCTTAGGTGCTGATGAGGTTCTTGACTANANGACNCCAGANGGAGCATCCCTCAGGAGTCCATCTGGGAGGAAATATGATGCAGTGATAAATTGTACCACTGGAATACCATGGTCAACTTTTGTTCCTAATTTGACCGAAAGGGGGATTGTTGTGGATTTAACACCTGGTGTAAGTTCATTGATGACATTTGCCTTGAAGAAACTTACTTTTTCCAAGAAGAAGCTAGTGCCATTTTTTGTAACTGTCAAGCGTGAGGGCTTGGAATATCTATTGCAATTAGTGAAGGATGGGAAACTCAAGACAATTATTGACTCCACGTNTCCTTTGAGCAAAGCTGAAGATGCTTGGGCTAAGAGCATTGANGGCCATGCNACTGGAAAAATCATTGTGGAGCCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01039	71880	76917	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001039s00031430.1	PF08240.7	ADH_N	34	98	5.50E-10
Glyur001039s00031430.1	PF13602.1	ADH_zinc_N_2	199	328	1.80E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.862
SRR1783600	control	1.558
SRR1783602	moderate drought stress	2.010
SRR1811619	moderate drought stress	2.130

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.070
DRR006520	Root Summer glycyrrhizin high producing strain	6.924
DRR006521	Root Winter glycyrrhizin high producing strain	30.868
DRR006522	Root Winter glycyrrhizin high producing strain	29.153
DRR006523	Root Summer glycyrrhizin low producing strain	5.156
DRR006524	Root Summer glycyrrhizin low producing strain	5.221
DRR006525	Leaf Summer glycyrrhizin high producing strain	58.029
DRR006526	Leaf Summer glycyrrhizin high producing strain	65.388

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.256
SRR2868004	Drought Stress (root)	35.738
SRR2967015	Control (root)	28.083

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	218.006
SRR9715740	Leaf	211.279
SRR9715741	Leaf	297.609
SRR9715739	Root	3.746
SRR9715742	Root	5.911
SRR9715743	Root	7.805

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.630
SRR8749028	MeJA induced 9h	30.617
SRR8749029	MeJA induced 9h	20.856
SRR8749030	Uninduced	21.733
SRR8749031	Uninduced	11.645
SRR8749032	Uninduced	16.739

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.153
SRR8400027	Control - Root	10.667