Gene detail

Gene detail information of Glyur001036s00023779.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78580.1	0	trehalose-6-phosphate synthase
NR	XP_003545692.1	0	PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Glycine max]
COG	YP_006545085.1	3.00E-128	alpha,alpha-trehalose-phosphate synthase (UDP-forming) [Methanoculleus bourgensis MS2]
Swissprot	tr\|Q9SYM4\|TPS1_ARATH	0	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
trEMBL	tr\|K7MCQ5\|K7MCQ5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G27480.3}

Sequence

Transcript Sequence

>Glyur001036s00023779.1
TCCTTAAGATTTCCCACTCACTCCCCCACCTTTTCGTGTCTCTCTCACTCCACCCCAGCTGTTACCCTTCTGTCCAACGATCTCCTCTCAGCAACCCTCTCTTCTCTTGCTTGCTTGCTTCTACTCTCCGCTAGTTTTCGAGGTGAGGTTGGGTTTGTTTTTTCTTCTTTGAGAGGGGGAGCGTATATCTATATGCCTGGGAATAGTAACTACAACGGTACTGGGGATAATACTGATCCGAATAATAATCACATTCCGGGTCGGGTTGAGCGGCTATTGAAGCAAAGAGAACTGAGGAAGAGTGGGAGGGGGAATAATATTCATTTGAACGAGGCGGCAGCGATTGATAGCAATGGGAGGAACAGCAGCAGCAGCAGCAGCAGCAGTAGTAGTAGTAGTAGTGAGGCGTTGTTGTTGGAGCAGGAACAGCAGCAGCAGCGGTTGTTGTTGTTGAGAGAAGAATATGAGAATGGGTCGGGTGGGGGTGGTGATGTGGTGGAAGGAGGAGGAAGGAAGAAGGGGTGTGAGAGGCAACAGCAGCAGCAAGAGGTTGTTGTTGGGAATGGGAAGGGTTATAGACAGAGGCTTTTGGTGGTGGCTAACAGGCTTCCCGTGTCTGCAATTCGGAAAGGGGAGGATTCGTGGTCTTTGGAGATTAGTGCCGGTGGCCTCGTCAGCGCTCTCTTAGGTGTGAAGGATTTTGAGGCAAGGTGGATAGGTTGGGCCGGTGTGAATGTGCCAGATGAGATTGGACAGAGGGCACTTACTAAAGCATTGGCTGAAAAGAGGTGTATCCCCGTATTTCTCGATGAAGAGATTGTTCATCAGTATTATAATGGCTATTGCAACAACATCTTGTGGCCCCTTTTCCATTACCTTGGACTTCCACAAGAAGACCGTCTTGCCACCACACGTAGCTTTCAGTCTCAGTTCGAGGCATATGAGAAAGCAAATCAAATGTTTGCTGATGTTGTCAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTCATGTTCCTTCCAAAATGCTTGAAGAAATATAACAGCAAAATGAAAGTTGGATGGTTTCTCCACACCCCATTTCCATCTTCTGAAATTCACAGGACACTGCCATCTCGTTCAGAGCTCCTGCATTCTGTTCTTGCAGCTGATTTAGTTGGTTTTCACACCTATGATTATGCAAGNCATTTTGTTAGTGCTTGTACTCGCATCCTTGGACTTGAGGGTACACCTTATGGGGTTGAGTATCAAGGGAAACTGACCCGAGTTGCTGCATTTCCAATTGGGATAGACTCAGACCGATTTATACGCGCACTAGACCTTCCTCCAGTACAGAATCACATCAAAGAATTACAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGCGTTGATCGCCTTGATATGATTAAAGGAATCCCTCAGAAAATTCTAGCATTTGAAAAATTTTTGGAAGAAAATGCTTATTGGCGTGATAAAGTTGTTTTGCTTCAAATTGCTGTGCCGACAAGAACAGATGTTCCTGAATATCAAAAGCTTACAAGCCAGGTTCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGAACATTGACTACTGTTCCTATACACCACCTGGATCGCTCTCTTGACTTTCCTGAACTATGTGCTTTGTATGCTGTTACTGGTAATATTTATTTTGCTGGTGCAGCACAGTCTCTTGGTGCTGGGGCAATTCTTGTCAACCCCTGGAACATTACAGATGTTGCTACTGCAATTGGCAGGGCCCTGAATATGCCATCTGCAGAAAGAGAAAAGAGACATAAGCATAATTTTCTTCATGTAAAATCCCACACTGCTCAAGAATGGGCTGGAACTTTTGTAAGCGAACTAAATGATACTGTTATTGAGGCACAACTAAGGACAAGACAAGTACCGCCTCGGCTTCCAGCGAAGACTGCAATTGACAGTTATCTGCAGTCAACTAATAGATTGCTCATATTGGGATTTAATGGAACTTTAACTGAACCAGTGGAGAAAACAGGTGATCAGATTAAAGAAATGGAACTCAAGGTGCATCCAGAATTGAGACAACCCTTGACAGCACTTTGCAGTGATCCAAATACCACAGTAGTTGTGCTCAGTGGAAGTGGTAGAAAAGTCCTAGATGATAACTTCAGAGACTATAACATGTGGTTGGCAGCAGAGAATGGGATGTTTTTACACCCTTCAAAGGGTGACTGGATGACAACAATGCCAGAGCATCTGAACATGGAATGGGTTGACAGCGTGAAGCTTGTTTTTGAGTACTTCACAGAAAGAACACCCCGGTCACATTTTGATTTGGAAGAGAGGGAAACTTCACTTGTATGGAATTACAAATACACAGATGTTGAGTTTGGAAAACTTCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGTCCGATTTCTAACTCTTCAGTTGAAGTTGTTCAAGGGAGCCGATCTGTTGAGGTGCGAGCTGTTGGTGTTACAAAGGGAGCAGCTATTGACCGCATCCTGGGTGAGATAGTCCACAGTAAATCTATGACATCACCAATTGATTATGTTCTTTGTATAGGACATTTTCTGGGGAAGGATGAAGATATTTATTCCTTTTTCGAACCGGATCTTCCTTCTATTGGTGTGGCTCTTCCGCGAAGTAAGGTAACAACTGATGCAGCTAAGTTTCCTGCTGAGAGGAGNCCTTCTTTGAAGATCCCAGCTAGCAGTAAAAATGGGCTAAAGTCATCTCAAAATAAGGCACAGAGGCCACCGTCAATTTCTGATCATCAGAAGAAAACAAACAATAACAATAACAATATTAATAATAACCATATATGCAGTGCACCACGACGCCCAGCTCCAGAAAAGATATCATGGAACGTGCTTGACCTTAAGAAAGAGAATTACTTCTCTTGTGCTGTTGGGAGAACTCGAACAAATGCTCGGTATACACTTGGCTCATCAGATGATGTTGTTGCGTTTCTGATGAAACTAGCGGGTGCATCATTGCACCCTTTGCCACCACCCAGTCAATATATTTAGTGCAGGTTTGGAGTTCCGTTTGGAGATTGCAAAAGTACTTTTGAACCAAAAGTAACCTTTTGGCCAAACATACTTTTAAACCCAAATGTACTTTTACTACATATCTTTGGTTTTCAATTGCAAATATACGTTTGAGTCTAAAAGCATGTTTGCTCAAAAAAAAAAAACTAAAATTATTTTGGGTTTGAATCTATTTTTGCAATCTCTTTAACTGAAAATCAAACATGCATAGTAGTTTGGCATGCATGCAAGGGGATGGTTCAAGTTTCAGAATTTGGTAACATCCACCCCAAGTGATCTATCTACCCACAGAAAAATGGGGAGATAAGAATAAAATTCAAAGGAGAAAAAAGAAACGAAAGAAGATGGATGTAGTCTAATTTTTTGAAGATACTAGTAAAAAAATGTAGGCTATTGAGTCTCACTAACACGTGTATATTAGTGCTTCATTTAGTTATGTCTTACACTCTTGGTGCGCAAGAGTTAGTGTCATATACTCAATTATGAATGAAGTTACATAAAAGTGACACAACTAAACGCATATCAGCTGTCAAATTCTTTAGATGGTTGATAAGTAATC

Protein Sequence

>Glyur001036s00023779.1
SLRFPTHSPTFSCLSHSTPAVTLLSNDLLSATLSSLACLLLLSASFRGEVGFVFSSLRGGAYIYMPGNSNYNGTGDNTDPNNNHIPGRVERLLKQRELRKSGRGNNIHLNEAAAIDSNGRNSSSSSSSSSSSSSEALLLEQEQQQQRLLLLREEYENGSGGGGDVVEGGGRKKGCERQQQQQEVVVGNGKGYRQRLLVVANRLPVSAIRKGEDSWSLEISAGGLVSALLGVKDFEARWIGWAGVNVPDEIGQRALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYEKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKKYNSKMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYAXHFVSACTRILGLEGTPYGVEYQGKLTRVAAFPIGIDSDRFIRALDLPPVQNHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENAYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFPELCALYAVTGNIYFAGAAQSLGAGAILVNPWNITDVATAIGRALNMPSAEREKRHKHNFLHVKSHTAQEWAGTFVSELNDTVIEAQLRTRQVPPRLPAKTAIDSYLQSTNRLLILGFNGTLTEPVEKTGDQIKEMELKVHPELRQPLTALCSDPNTTVVVLSGSGRKVLDDNFRDYNMWLAAENGMFLHPSKGDWMTTMPEHLNMEWVDSVKLVFEYFTERTPRSHFDLEERETSLVWNYKYTDVEFGKLQARDMLQHLWTGPISNSSVEVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTSPIDYVLCIGHFLGKDEDIYSFFEPDLPSIGVALPRSKVTTDAAKFPAERXPSLKIPASSKNGLKSSQNKAQRPPSISDHQKKTNNNNNNINNNHICSAPRRPAPEKISWNVLDLKKENYFSCAVGRTRTNARYTLGSSDDVVAFLMKLAGASLHPLPPPSQYI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01036	80789	92823	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT20

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K16055	TPS	EC:2.4.1.15 3.1.3.12	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process
GO:0005992 trehalose biosynthetic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001036s00023779.1	PF00982.16	Glyco_transf_20	195	560	3.50E-137
Glyur001036s00023779.1	PF00982.16	Glyco_transf_20	565	630	1.70E-19
Glyur001036s00023779.1	PF02358.11	Trehalose_PPase	669	883	6.10E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.266
SRR1783600	control	22.313
SRR1783602	moderate drought stress	23.756
SRR1811619	moderate drought stress	23.493

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.324
DRR006520	Root Summer glycyrrhizin high producing strain	17.040
DRR006521	Root Winter glycyrrhizin high producing strain	39.661
DRR006522	Root Winter glycyrrhizin high producing strain	38.518
DRR006523	Root Summer glycyrrhizin low producing strain	16.524
DRR006524	Root Summer glycyrrhizin low producing strain	16.530
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.337
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.195

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.334
SRR2868004	Drought Stress (root)	19.646
SRR2967015	Control (root)	26.568

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.012
SRR9715740	Leaf	9.054
SRR9715741	Leaf	8.610
SRR9715739	Root	2.003
SRR9715742	Root	22.481
SRR9715743	Root	18.735

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.197
SRR8749028	MeJA induced 9h	2.846
SRR8749029	MeJA induced 9h	2.070
SRR8749030	Uninduced	1.433
SRR8749031	Uninduced	0.862
SRR8749032	Uninduced	1.677

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.239
SRR8400027	Control - Root	26.294