Gene detail

Gene detail information of Glyur001036s00023778.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78570.1	0	rhamnose biosynthesis 1
NR	XP_006585326.1	0	PREDICTED: probable rhamnose biosynthetic enzyme 1-like isoform X2 [Glycine max]
COG	YP_007768743.1	2.00E-89	dTDP-glucose 4,6-dehydratase [Coprococcus catus GD/7]
Swissprot	tr\|Q9SYM5\|RHM1_ARATH	0	UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase {ECO:0000305\|PubMed:17190829}
trEMBL	tr\|I1KTG8\|I1KTG8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G15680.1}

Sequence

Transcript Sequence

>Glyur001036s00023778.2
CCTGTTAGTTCTATTCAATTTCTGTTTCCATGTCTCTAGTATGCTTTTATCTTCATTTGAGATTATTTTTGTAAAATGATTTATTGATTACTTTTTTTTAAGGTTCTAATTGATATTTTGTGATTTGTCTTTCTTTTTATTGTACAAGTAGCCTGACATGGCTTCATATACCCCAAAGAATATCCTCATTACTGGGGCAGCTGGATTTATTGCATCTCATGTTGCCAACCGGCTTGTACGAAGTTATCCTGACTACAAAATTGTCGTGCTTGACAAACTGGATTATTGCTCTAATCTGAAGAATCTCCTTCCTTCTAAATCATCTCCCAAATTCAAGTTTGTGAAGGGGGATATTGGTAGTGCTGATCTTGTCAACTACCTTCTTATCACTGAGTCCATCGACACAATAATGCACTTTGCCGCTCAAACTCATGTTGACAACTCATTTGGTAATAGCTTTGAGTTCACCAAGAACAACATATATGGTACACATGTCCTATTAGAAGCCTGCAAGGTAACTGGCCAGATCAGAAGGTTCATTCATGTGAGCACTGATGAGGTCTATGGGGAGACAGAAGAAGATGCTCTTGTAGGAAACCATGAGGCTTCTCAACTTCTTCCAACAAACCCATACTCTGCAACAAAAGCTGGGGCAGAAATGCTTGTCATGGCATATGGTAGGTCATATGGGTTACCTGTTATCACAACACGTGGAAACAATGTTTACGGGCCCAATCAGTTTCCTGAGAAGTTGATTCCAAAGTTCATCCTTCTAGCTATGCAAGGAAAGGATCTTCCAATTCATGGGGATGGTTCTAATGTGAGGAGTTATTTATATTGTGAAGATGTTGCTGAGGCATTTGAAGTTGTCCTTCACAAGGGAGAGGTTGGCCATGTTTACAATATCGGGACAACAAGGGAAAGGAGAGTTATCGATGTAGCNAAAGATATATGCAAGCTTTTCTCAATGGACCCGGAAACTCGTATAAAATTCGTAGAAAACAGACCGTTTAATGACCAGAGATACTTTCTAGACGATCAAAAGCTGAAGAACATTGGTTGGTCCGAGAGGACCCCTTGGGAAGAGGGCCTGAAGAAGACAATGGAATGGTATACCAAAAATCCTGATTGGTGGGGGGATGTCACTGGGGCATTGCTTCCTCATCCAAGGATGCTGATGATGCCTGGTGGTATGGAGAGACATTTTGAAGGATCTGAAGAGGATAAACCTGCTTCCCTTAATTCAACTAATACTCGAATGGTGGTTCCATCATCCAAGAACACCGGTGTTCAGCAGAAACATCCTTTTACGTTCTTGATCTATGGTAGAACAGGGTGGATCGGAGGTTTACTTGGGAAATTGTGTGAAAAGCAAGGAATTCCATTTGAGTATGGAAAGGGGCGCCTAGAGGATCGTTCCTCACTTATCGCTGATATTCAGAATGTGAAGCCAACTCATGTTTTCAATGCTGCAGGCGTGACCGGAAGACCCAATGTTGACTGGTGTGAGTCTCATAAAACAGAAACTATCCGCACCAATGTTGCCGGTACCTTAACTTTGGCTGATGTCTGCAGAGAGCATGGGATATTGATGATAAATTATGCTACTGGATGCATATTTGAGTATAATGCAACACATCCGGAAGGCTCTGGCATTGGTTTTAAAGAGGAAGACAAGCCCAATTTCATTGGCTCTTTCTATTCCAAAACTAAAGCTATGGTTGAGGAGCTCTTGAGAGAGTATGACAATGTATGCACCCTCAGGGTTCGCATGCCGATTTCGTCTGACCTGAATAACCCGCGCAACTTCATCACGAAGATTTCTCGTTACAACAAAGTAGTCAACATTCCAAACAGCATGACGATTCTGGATGAACTTCTCCCGATCTCGATCGAGATGGCGAAGAGAAACTTGAGGGGAATCTGGAACTTCACCAATCCTGGGGTTGTGAGCCACAATGAGATCCTTGAGATGTATAGGGATTACATTGACCCCAACTTCAAGTGGAATAACTTCACACTTGAAGAGCAAGCCAAGGTGATTGTTGCTCCTAGAAGCAACAATGAGATGGATGCTTCCAAATTGAAGAAGGAATTCCCAGAATTGCTTCCCATCAAGGAATCACTTATCAAGTATGTCTTCAAGCCAAACAAGAAATAAGCAGTTTTTTTTAAATGTTTTAGACCATGGCAGTAAAATTGTGTTCTAGCTACATAATAGGTCACTCATTATTCCACTGTTAGTTCCATTCAGTTACTGTGTGTAGAGTGTNGCTAGTGTTACAATCGCATTTAGGTATGTTTCCTAAGTACCACTTCCAAGTTCTTAGCGTCCTCTTAGCTTGTGATGGGCAAATCCTTGCATCTTTGTAATGCTTTGTATTCTTTTATTGCTCATCTAGAATGAACATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01036	75226	78524	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12450	RHM	EC:4.2.1.76	Amino sugar and nucleotide sugar metabolism	map00520
			Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0009225 nucleotide-sugar metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0008460 dTDP-glucose 4,6-dehydratase activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001036s00023778.2	PF01370.16	Epimerase	9	251	1.10E-54
Glyur001036s00023778.2	PF04321.12	RmlD_sub_bind	386	603	5.40E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	111.753
SRR1783600	control	111.550
SRR1783602	moderate drought stress	50.700
SRR1811619	moderate drought stress	51.182

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	79.985
DRR006520	Root Summer glycyrrhizin high producing strain	79.602
DRR006521	Root Winter glycyrrhizin high producing strain	91.191
DRR006522	Root Winter glycyrrhizin high producing strain	88.043
DRR006523	Root Summer glycyrrhizin low producing strain	90.822
DRR006524	Root Summer glycyrrhizin low producing strain	91.451
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.293
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.319

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	160.114
SRR2868004	Drought Stress (root)	79.499
SRR2967015	Control (root)	72.024

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.290
SRR9715740	Leaf	33.191
SRR9715741	Leaf	42.642
SRR9715739	Root	34.080
SRR9715742	Root	141.367
SRR9715743	Root	115.986

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	70.039
SRR8749028	MeJA induced 9h	115.295
SRR8749029	MeJA induced 9h	85.468
SRR8749030	Uninduced	93.595
SRR8749031	Uninduced	74.591
SRR8749032	Uninduced	59.064

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	168.939
SRR8400027	Control - Root	181.202