Gene detail information of Glyur001036s00023770 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26740.1 | 5.00E-22 | CCR-like |
| NR | XP_011036168.1 | 1.45E-43 | PREDICTED: light-regulated protein [Populus euphratica] |
| Swissprot | tr|Q03200|LIRP1_ORYSJ | 2.00E-25 | Light-regulated protein (Precursor) |
| trEMBL | tr|B9GMS6|B9GMS6_POPTR | 2.00E-43 | Gene GA family protein {ECO:0000313|EMBL:EEE84150.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01036 | 38457 | 39229 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001036s00023770.1 | PF07207.6 | Lir1 | 50 | 138 | 5.30E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.789 |
| SRR1783600 | control | 0.757 |
| SRR1783602 | moderate drought stress | 6.085 |
| SRR1811619 | moderate drought stress | 6.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.493 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.056 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.344 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.501 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.094 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.325 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 175.751 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 174.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.879 |
| SRR2868004 | Drought Stress (root) | 2.989 |
| SRR2967015 | Control (root) | 12.632 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 72.312 |
| SRR9715740 | Leaf | 110.900 |
| SRR9715741 | Leaf | 77.493 |
| SRR9715739 | Root | 0.350 |
| SRR9715742 | Root | 1.228 |
| SRR9715743 | Root | 1.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.565 |
| SRR8749028 | MeJA induced 9h | 47.435 |
| SRR8749029 | MeJA induced 9h | 35.766 |
| SRR8749030 | Uninduced | 21.080 |
| SRR8749031 | Uninduced | 26.515 |
| SRR8749032 | Uninduced | 63.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.039 |
| SRR8400027 | Control - Root | 3.469 |