Gene detail information of Glyur001036s00023769 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26740.1 | 2.00E-21 | CCR-like |
| NR | XP_011036168.1 | 1.16E-42 | PREDICTED: light-regulated protein [Populus euphratica] |
| Swissprot | tr|Q03200|LIRP1_ORYSJ | 2.00E-24 | Light-regulated protein (Precursor) |
| trEMBL | tr|B9GMS6|B9GMS6_POPTR | 1.00E-42 | Gene GA family protein {ECO:0000313|EMBL:EEE84150.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01036 | 36158 | 36901 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001036s00023769.1 | PF07207.6 | Lir1 | 50 | 138 | 7.40E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.539 |
| SRR1783600 | control | 0.562 |
| SRR1783602 | moderate drought stress | 6.913 |
| SRR1811619 | moderate drought stress | 6.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.477 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.851 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 33.841 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 31.766 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.433 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.278 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 173.067 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 174.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.066 |
| SRR2868004 | Drought Stress (root) | 1.390 |
| SRR2967015 | Control (root) | 10.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.077 |
| SRR9715740 | Leaf | 37.791 |
| SRR9715741 | Leaf | 27.197 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.764 |
| SRR9715743 | Root | 0.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.452 |
| SRR8749028 | MeJA induced 9h | 93.129 |
| SRR8749029 | MeJA induced 9h | 64.913 |
| SRR8749030 | Uninduced | 37.079 |
| SRR8749031 | Uninduced | 44.782 |
| SRR8749032 | Uninduced | 122.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.075 |
| SRR8400027 | Control - Root | 1.006 |