Gene detail

Gene detail information of Glyur001036s00023766

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53670.1	7.00E-45	methionine sulfoxide reductase B 1
NR	XP_004513790.1	1.53E-89	PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic-like [Cicer arietinum]
COG	YP_007168598.1	3.00E-39	methionine-R-sulfoxide reductase [Halothece sp. PCC 7418]
Swissprot	tr\|Q9C8M2\|MSRB1_ARATH	3.00E-55	Peptide methionine sulfoxide reductase B1, chloroplastic (Precursor)
trEMBL	tr\|V7AKH7\|V7AKH7_PHAVU	3.00E-84	Uncharacterized protein {ECO:0000313\|EMBL:ESW05358.1}

Sequence

Transcript Sequence

>Glyur001036s00023766.1
AGGAAATCCACATTGACTCTCTCTCTCTCTCTCTCTGTTAAGAATCGAAGAGCTCTGCGTGTGGACAATGGCTTCCCATAGTTTGAGCCTACCAGCAGCGCGTATTCCTTCTTCCAATAGGCTAATTCAGAAGCTTGATTGCAAGGTTTTGTTGTTGTGGCCTTCACGTTCTCAAACCAAACCCAGTAGAAGAGTTTCTTCCTCAATCAGGGCAATGGGGTCCTCAGCTTCTTCCCACTCCCAACAGGCAAACAGCACCGAATTTGAATCAGGAGCTGGCAGTACTGTTGATTATAAATCTTTAAGTGANGAAGAGTGGAAGAAGCGGCTAACAAATGAGCAATTCTATATTACTCGACAAAAGGGGACTGAGAGAGCTTTCACTGGTACAGAACATGATTTTGCATACCTGGGCAAGGTAAGGAAAAATGCTACATATTCTCGTCTCTTAAAGTCTACTTCTGTACCATGCTTTGCTTGGACTGGGAGTATTGGAATACCAAAACCCAAGGGATTTACCATTGCATATGTTGTGACACACCTTTATTTGAGTAAATCATCAACTAAGTTTAATAGTGGAACAGGCTGGCCATCCTATTACCAGCCAATTGGGAACAATGTGAAGTCAAAGCTAGATTTGTCAATTATATTCATGCCCCGCCAGGAAGTTCTTTGCGCTNTTTGTGATGCTCATCTCGGACACGTGTTTGATGATGGTCCTCCACCCACAGGAAAGCGTTACTGCATCAACAGTGCTGCCCTTAAGTTCAAACCAAGGCAGTAACAGTGTGAAATAATTGTCACTCAGAAGCAGAAGGTCTAATATTGAGGGGGTAACCAGTAAGCATGCAAATTGATCAGCTTATCAAATACATTTTGCTGTTCTTCAAACACTTGGAGTGTATCCAAACACTGTACAGAAGTAGTCAAGTAGATGATTACTATAGTGAAAATTCAAACTCTTATATAATGTACTTTTGAGTGTTGGTGTGTTGTGNGCATTACCAACTTACCATTCGTTGTTTCCCAACAATGTTCAAAGTTTTTGAACTATCCGGTTTAATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01036	19942	22800	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0030091 protein repair

GO:0055114 oxidation-reduction process

molecular_function

GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor

GO:0033743 peptide-methionine (R)-S-oxide reductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001036s00023766.1	PF01641.13	SelR	156	236	3.90E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.713
SRR1783600	control	26.759
SRR1783602	moderate drought stress	25.735
SRR1811619	moderate drought stress	24.963

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.783
DRR006520	Root Summer glycyrrhizin high producing strain	34.350
DRR006521	Root Winter glycyrrhizin high producing strain	49.607
DRR006522	Root Winter glycyrrhizin high producing strain	48.444
DRR006523	Root Summer glycyrrhizin low producing strain	46.150
DRR006524	Root Summer glycyrrhizin low producing strain	45.842
DRR006525	Leaf Summer glycyrrhizin high producing strain	113.357
DRR006526	Leaf Summer glycyrrhizin high producing strain	112.036

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.935
SRR2868004	Drought Stress (root)	38.793
SRR2967015	Control (root)	32.872

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	93.636
SRR9715740	Leaf	131.193
SRR9715741	Leaf	110.718
SRR9715739	Root	16.922
SRR9715742	Root	20.081
SRR9715743	Root	21.347

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.815
SRR8749028	MeJA induced 9h	30.997
SRR8749029	MeJA induced 9h	28.404
SRR8749030	Uninduced	19.108
SRR8749031	Uninduced	16.973
SRR8749032	Uninduced	25.389

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.556
SRR8400027	Control - Root	36.525