Gene detail

Gene detail information of Glyur001036s00023763

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G09040.1	6.00E-119	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_006598958.1	0	PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like [Glycine max]
Swissprot	tr\|Q9SS83\|PP220_ARATH	4.00E-136	Pentatricopeptide repeat-containing protein At3g09040, mitochondrial (Precursor)
trEMBL	tr\|V7AJC3\|V7AJC3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW05365.1}

Sequence

Transcript Sequence

>Glyur001036s00023763.1
ATGATTCTCCCCGTATTTTTCTCCGTCAATTCCACTCAAGCCAAACGTGTCCACACCACCCTCTCATTCTTCTTCACAGCCCACGTCACCACCAATCCACCCAACAAGCCAGTGTCAACAACAAGGAGACCCTTCCATTCAAAACCATTTTCAGAACCCCAAAACAACAGCAACAAAGGTTTTTGCTTCCAAGACTGTGTCTCACTCCTGCAGCACCTGAGGGACCACGGAGACATAAACTATGGCAGAACACTCCATTCTCTCTTCGTTAAAAGTGCCCTTGACAACGACGTCTTCGTACAAAACAACATGGTCAGGTTCTACGGCGATATCGGGGAACTCGAGAATGCGCAGAACCTGTTCGACGAAATTCCTGAACCGAGNTTGGTCTCTTGGACGAGCTTGGTCTCTTGCTATGTCCATGCGGGGCAACATGAAATGGGTCTGAGCTTGTTTCGTAGCTTGTGTGATTCCGGGGTGCGCCCTAACGAGTTTGGTTTCTCTGTGGCACTCAAGGCTTGCAGGGTGATGCGTGATGTTGTCATGGGTAGGCTCATTCATGGGTTGATACTGAAAAGCGGGTTTGATTCGTGTAGATTTTGTGGTGCTTCGATTCTTCACATGTATGCTTGTTGTGGAGGTGTTGAGGATTCGAGGAAGTTTTTTGATGGGTTTTGTTGTGAGGGTGAAAAGTTTGAGGCTTTGTGGAATGCTTTGCTGAATGCTTACGTGGAGGTGTCTGATGTGGAGGGTTCTGTGAAGTTGTTTCGTGAGATGGGGCACTCTGCTGTGTCGCCAAATCGCTTTACATACACAATCTTTGTGAAGCTTTGTGCAGATGTGTTGGATTTTGAACTTGGGAGGTGTGTTCATGGCCAGACTGTGAAGATTGGGATTGAAAATGATGTTGTGGTGGGTGGGGCTCTTATTGACTGCTATGCTAAACTGGGGTTTTTAGAGGATGCTTGTAAAGTGTTTCGAATCCTCAAAGAGAAGGATAATGTGGCATTGTGTGCTTTGCTTGCTGGGTTTAATCAGATTGGGAAATCCAAGGAAGGACTTGCATTGTATATTGATTTTCTTTGTGAAGGGAATAAACCAGACCCATTTACATGCGCAAGTGTTGCCAATTTTTGCTCAAATTTGGAGAACGAGCTTGCTGGTACTCAAGTTCACTGTGGTTTCATCAAACTTGGCTTTAAGATGGATTCATATCTTGGCAGTGCCTTTATCAACTTGTATGGAAACTTTGGGATGATATCTGAGGCTTATAAATGTTTTCTTGACATTTACAATAAAAATGAAATATGCCTAAGTGCCATGATGAATTGTTTCATTCTTAATTCAAATGATTTGAAAGCTTTGGAGCTGTTTTGTGCGATGAGGGAAGTTGGTATTGCACAAAGCAAATCTTCAATCAGCTATGTTTTACGGGCTTGTGGGAACCTTTTTATGCTTAGAGAAGGAAGATCGGTTCATTGTTACATGATTAAAAATCCTTCTGAAGATAACTCTAGGTTGGGCTTAGAAAATGTTCTTCTTGAGATGTATGTTAAATGTGGAGTTATTTATGATGCAAAATTGATTTTTGAAAGGATGCAAATACGAAATGAGTTTTCCTGGACTACTATCATATCTGGATTCAGTGAATCAGGACACTTTGTAGAAGCTCTGGGGATCTTCCGTGATATGCTTCTATATTCAAAACCTAGTCAATTCACCTTACTTAGTGTTATTCAGGCTTGTGCAGAAACAAAGGCACTTGATGTAGGAAAACAAGTCCATTCTTATATCATGAAAGTAGGATTTGAGTATTATCCATTTGTTGGAAGTGCCCTGATTAACATGTATTCTGTATTTAAACATGAAACTTCGAATGCTTTCCTGGTATTCTTGTCCATGAAAGAGCAAGATCTTATCTCTTGGAGTGTCATGTTAACTTCATGGGTCCAAAATGGTTATCATGAAGAAGCACTTAAACTTTTTGCACAATTCCAAAATGTTCCCATTTTTCAGGTTGACGAGTCTATCTTATCAAGCTGTATTTCAGCTGCTGCTGGCTTAGCAGCATTGGACATTGGCAAATGTTTCCATTCCATGGTTATCAAACTTGGATTTGAAATTGATCTTCACATGGCTTCTTCCATTACAGACATGTATAGTAAATGTGGAAACATTAAAGAAGCCTGCAAGTTTTTCAATACTATCAGTGACCATAATTTAGTATCTTGGACAACTATGATATATGGATATGCTTATCATGGGCTTGGGAAAGAAGCTATTGATTTGTTTAACAAGGGTACAGAATCTGGGTTGGAACCTGATGGTGTCACCTTCACTGGGGTTTTAGCTGCATGTAGTCATGCTGGACTGGTGGAGGACGGTTGCAAATATTTTGAGTATATGAGAAGTAAATACAACAGTGAAGTAACCATAAATCATTATGCTTGCATGGTTGACCTTCTTGGTCGAGCAGCAAAATTGGAAGAAGCAGAGGCTTTGATAAAGGAAGCTCCATTTCATTCAAAATCTCTTCTATGGAAGACATTCCTAGGTGCTTGCTCTAAACATGAGAATGCTGAAATAGGAAATAGAATATCAAAGATGCTTGCTGATATAGAACTGGATGAACCCTCAACCTATGTTCTATTGTCTAACATTTATGCATCAGCATCAATGTGGAAAAATTCAATAGAGTTGAGAAACAAAATGGTAGAAGGTAGTGTTAATAAGCAACCTGGTAGTAGTTGGATTCGGTTGGCAGGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01036	8051	10819	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001036s00023763.1	PF01535.15	PPR	130	160	7.80E-05
Glyur001036s00023763.1	PF13041.1	PPR_2	235	279	5.70E-09
Glyur001036s00023763.1	PF01535.15	PPR	308	332	0.0028
Glyur001036s00023763.1	PF01535.15	PPR	438	466	0.35
Glyur001036s00023763.1	PF01535.15	PPR	539	565	7.50E-05
Glyur001036s00023763.1	PF01535.15	PPR	640	664	0.0054
Glyur001036s00023763.1	PF13041.1	PPR_2	740	787	1.60E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.591
SRR1783600	control	0.595
SRR1783602	moderate drought stress	0.924
SRR1811619	moderate drought stress	0.886

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.519
DRR006520	Root Summer glycyrrhizin high producing strain	1.479
DRR006521	Root Winter glycyrrhizin high producing strain	1.213
DRR006522	Root Winter glycyrrhizin high producing strain	1.169
DRR006523	Root Summer glycyrrhizin low producing strain	1.772
DRR006524	Root Summer glycyrrhizin low producing strain	1.834
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.805
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.787

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.562
SRR2868004	Drought Stress (root)	1.653
SRR2967015	Control (root)	1.688

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.101
SRR9715740	Leaf	1.172
SRR9715741	Leaf	1.069
SRR9715739	Root	0.502
SRR9715742	Root	1.404
SRR9715743	Root	0.922

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.412
SRR8749028	MeJA induced 9h	1.073
SRR8749029	MeJA induced 9h	0.902
SRR8749030	Uninduced	0.298
SRR8749031	Uninduced	0.028
SRR8749032	Uninduced	0.237

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.332
SRR8400027	Control - Root	2.190