Gene detail

Gene detail information of Glyur001036s00023758

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17120.1	0	cationic amino acid transporter 8
NR	XP_004497371.1	0	PREDICTED: cationic amino acid transporter 8, vacuolar-like [Cicer arietinum]
COG	NP_622386.1	2.00E-72	amino acid transporter [Thermoanaerobacter tengcongensis MB4]
Swissprot	tr\|Q9SHH0\|CAAT8_ARATH	0	Cationic amino acid transporter 8, vacuolar
trEMBL	tr\|I1KZY5\|I1KZY5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G01230.1}

Sequence

Transcript Sequence

>Glyur001036s00023758.1
ATGGAACCACCAGCGTCCTCCTCCGCCGCCATCACCGCCACTTCGAAGACGCGAACCTACTGGCGGTGGAGCAAGCAAGACTTCTTCCCGGAGCCGTCGTTCCAATCGGGGAAATCCTACCGTAACGCGGTGGCGAACACGTGCCCTCGCCTGAAGGATCGACTCCTGAACCGCTCCACCGACTCGCACGAGCTCCTCGTTCTCCCCAAGGCCAGCGAGAATCGCATGACTCGCTGCCTCACCTGGTGGGACCTCATCTGGCTCGCCTTCGGCTCCGTCGTCGGCTCCGGCATCTTCGTCGTCACCGGCCAGGAAGCACGCCTCACCGCCGGTCCCTCCATCGTCCTCTCCTACGCCGCCTCCGGCTTCTCCGCCCTCCTCTCCGCCCTCTGCTACACCGAGTTCGCCGTCGATGTCCCAGTCGCCGGCGGCTCCTTCTCATTCCTCCGAATCGAGCTCGGCGACTTCCTCGCCTTCATCGCCGCCGGCAACATTCTCCTCGAGGCACTCGTCGGCGCCGCGGGACTCGGCCGCTCATGGTCCTCCTACTTCGCCACCATGGTGAAAAACGACCCGGACTCATTCCGGATCCGGGTCAAATCCCTAAAAACCGGCTTCAACCTCCTCGATCCCGTCGCCGTTACCGTTCTCCTAATCACCAACGGCATCGCCGTTACCGGAACCAAAAAAACCTCCGTCTTAACCTATCTCAGCTCCGTTATCACCACACTAATCTTCGCCTTCATCATAATAACCGGCTTCGTTAACGGAAAGTCCTCAAACCTAACGCCGTTTTTCCCTTACGGCGCTAAGGGCGTTTTCAACGCCGCTGCCGTTGTGTATTGGTCGTACACGGGTTTCGACATGGTTGCAACGATGGCTGAAGAGACCAAAAACCCTTCTAGAGACATACCTATTGGCTTGATTGGTTCAATGACGATGATAACCGCCGTTTATTGTTTAATGGCTATGGCGCTTGTTACGATGGTTAAGTACACGGAGATTGACCCTGACGCCGCTTACTCCGTTGCCTTTGTCCAAATCGGAATGGATTGGGCCAAGTACCTTGTTAGTGTTTGCGCTTTGAAGGGAATGACCACGAGTTTGCTCGTTGGGTCCATGGGCCAGGCCCGTTACACAACCCAGATCGCAAGGTCACATATGATTCCACCCTTCTTCGCACTCGTTCACCCCAAAACTGGAACACCGGTCAACGCCACCCTGTTGACCACTCTCTGCAGTTCAGTCATTGCTCTTTTCACTAGCCTTGATGTTCTGTCCAGTGTTTTTTCCGTTAGCACGCTCTTCATTTTCATGCTCATGGCCGTTGCGTTGCTCGTGAGGAGGTATCACGTGAGGGGGGAGGAGGCAACTCATAAGAGTGGTGATCATCACGTGAGGTGGCTTGTGTTGTGCTTGTTTGTTATTGTTGGTTCCTCTGCGGTGGGGTCTGCACTTTGGAACTCGGGGAAGCTGGGTTGGGTTGGGTACACGGTGGCTGGTTTGGTTTGGTTTTTGGCCACGTTGGGGATGAGTTTCCTACCGAAGCAGAGGACTCCCAAGGTTTGGGGTGTTCCATTGGTTCCGTGGCTGCCTTCGTTGTCCGTTGCCACCAATGTTTTCCTCATGGGGTCGTTAGGCTCTGAGGCTTTCTCTAGGTTTTTGATTTGCACTGCTGTCATGTTTGTGTATTATTTGTTTGTTGGTGTCCATGCTACTTATGACGTGGACCATCAAAATGATCAAGAATCAAAGCATGGTGGGGGAATGGAAGATGGTACCAATCTAGGGGAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01036	1946	3742	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0003333 amino acid transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001036s00023758.1	PF13520.1	AA_permease_2	80	513	7.20E-50
Glyur001036s00023758.1	PF13906.1	AA_permease_C	523	572	3.20E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.140
SRR1783600	control	18.380
SRR1783602	moderate drought stress	21.424
SRR1811619	moderate drought stress	21.915

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.459
DRR006520	Root Summer glycyrrhizin high producing strain	24.544
DRR006521	Root Winter glycyrrhizin high producing strain	1.880
DRR006522	Root Winter glycyrrhizin high producing strain	1.779
DRR006523	Root Summer glycyrrhizin low producing strain	9.834
DRR006524	Root Summer glycyrrhizin low producing strain	10.133
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.292
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.047

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.960
SRR2868004	Drought Stress (root)	28.617
SRR2967015	Control (root)	24.643

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.416
SRR9715740	Leaf	14.313
SRR9715741	Leaf	16.534
SRR9715739	Root	19.281
SRR9715742	Root	21.842
SRR9715743	Root	20.179

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.161
SRR8749028	MeJA induced 9h	3.361
SRR8749029	MeJA induced 9h	1.542
SRR8749030	Uninduced	1.918
SRR8749031	Uninduced	0.524
SRR8749032	Uninduced	2.111

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.612
SRR8400027	Control - Root	32.393