Gene detail

Gene detail information of Glyur001034s00029015.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09620.1	0	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases
NR	XP_004506691.1	0	PREDICTED: leucine--tRNA ligase, cytoplasmic-like isoform X1 [Cicer arietinum]
COG	YP_685547.1	1.00E-177	leucyl-tRNA synthetase [Methanocella arvoryzae MRE50]
trEMBL	tr\|I1J9U5\|I1J9U5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G41660.1}

Sequence

Transcript Sequence

>Glyur001034s00029015.1
AACGGCCCTTGTTCTTCCTGGTTTATTACTAATAGTGTAGGTCGGGGCGGGTAGGAATCCGACCCAAAACGATAAACCCTTGCTGTGTGTGCTTCTTCTGGTCTTGTCTCTATGCCGTTGCGGCTCGGTGTATGTTGATTTGTGGTAGTAGTTCAGCGGCACACGCACACAGGCACAGGCACACGAGGCATTTAGCTTCGGCGTTGAACCGTTGGCTCGGCCTTACACACATGGCTTCAACTGAGGGTGGGAAGAGTTTCGCTCGTAGGGACCGTCTCCGCGAGATCGAGGTNAAGGTTCAGAAATGGTGGGAAGAGAAAGAGGTTTTCAGGTCCGANCCTGGAGACAAACCTCCCGAACCAGGTGAAAAATTCTTCGGCAACTTCCCTTTNCCTTACATGAACGGTTACCTTCACTTAGGTCACGCGTTTTCNCTCTCCAAGCTAGAGTTCGCCGCCGCTTTCCACAGACTCAGAGGCGCCAACGTGCTTCTCCCNTTCGCTTTTCACTGCACCGGCATGCCAATCAAAGCCTCCGCCGACAAACTCGCCAGAGAGATCCAGCAATTCGGCGACCCTCCCGTTTTCCCCGGCGAGGAACAACAACAAGAAGAAGCTGATGCCGCCGCCGCCGCAGAAGATAATTTCGGCGATGGTGCTCCTCCTGATAATAAATTCAAAGGGAAGAAATCTAAGGCTGCTGCTAAATCNGGTGGACAGGTTTACCAGTGGGAGATTATGAGAAGCGTTGGTATTTCTGATGCTGAGATTTCCAAGTTTCAGGATCCTTATAAGTGGCTCTCTTATTTCCCTCCTTTGGCTGTTGAGGATCTTAGGGCTTTTGGGTTGGGTTGTGATTGGAGGAGGTCCTTCATTACAACCGATATGAACCCTTATTTTGANTCATTTGTTAGGTGGCAGGTGAGGAAGTTGAAGTCAATGGGGAAGATTGTTAAGGATGTTAGGTATACAATCTTTTCACCCTTGGATGGACAACCATGTGCTGATCATGATAGGGCAACTGGTGAAGGGGTTCAGCCACAGGAATACACTATCATCAAGATGGAGTTGGTTCCTCCTTTTCCTCCTAAGTTTAAGATTCTTGAGGGAAAGAAGGTTTTCCTTGCTGCTGCTACATTGAGACCTGAGACAATGTATGGACAAACAAATGCTTGGGTTTTGCCTGATGGAAAGTATGGTGCTTTTGAAATCAATGAGAATGAGGTATTTGTGAGTTCACACAGAGCAGCACTTAACCTTGCATACCAGAACCACTCAAGGGTACCTCAGAAACCCACTTGTTTGCTTGAACTCACTGGCCATGATTTGATTGGAGTTCCTCTTAGATCTCCTCTATCGGTTAATGAAATCATATATGCACTTCCTATGCTGTCTATTTTGATGGATAAAGGTACTGGGGTGGTGACCAGTGTGCCCAGTGATGCCCCTGATGACTACATGGCCTTGCATGATTTGAAGTCGAAACCGGCATTTAGGGCCAAGTATGGTGTTAAGGATGAGTGGGTGTTGCCGTTTGAGNTTGTGCCTATCATTGAGGTCCCCCAGTTCGGAAACAAGTGCGCTGAGACGGTTTGCTTGCAGATGAAAATCAAGAGCCAGAATGAGAAGGAGAAGCTTGCGGAAGCCAAGAAGCAAACCTACTTGAAAGGATTCACTGAGGGGACAATGATTGTTGGGGAATTTGCTGGAAGGAAAGTTCAGGAAGCTAAGCCCTTGATTAGGAGCAAGCTTCTAGAAACAGGTCAAGCTATTGTGTATAGTGAGCCAGAGAAGCGGGTGATGTCAAGATCTGGTGATGAATGTGTTGTAGCTCTGACAGATCAGTGGTATATTACATATGGGGAATCGGAATGGAAGAAGTTGGCTGAGGAATGCCTGACTNACATGAACCTGTATTCTGATGAGACAAGACACGGGTTTGAGCATACTTTAAGCTGGTTGAACCAGTGGGCTTGCTCGCGATCATTTGGTCTTGGGACACGTATACCATGGGATGACCAGTTCCTAGTCGAGTCTTTATCGGATTCCACCATTTACATGGCTTATTACACCATTGCACACTATTTGCAGAATGGTGACATGTATGGATCCAGCGAATCTGCTATCAAACCTCAACAACTGACTGATGATGTCTGGGATTATATTTTCTGTGGTGGACCTTTCCCAAAATCCNCTGATATTTCACCATCCCTTTTAGACAGAATGAAGCTGGAATTTGAGTATTGGTATCCATTTGATCTTCGAGTTTCTGGTAAGGATCTCATCCAGAATCATCTTACCTTCTGCATTTACAACCATACTGCAATTATGTCCAAGCATCACTGGCCTCGTGGGTTTAGATGCAATGGCCACATAATGCTCAATTCTGAGAAAATGTCCAAGTCCACTGGAAATTTCAGGACTATTCGTCAGGCAATTGAAGAGTTTTCTGCTGATGCTACACGGTTCTCTTTGGCTGATGCTGGNGATGGCGTTGATGATGCAAATTTTGTCTTCGAGACGGCAAATGCTGCAATTCTCCGGCTCACCAAAGAGATTGCATGGTATGAAGAGATTCTGGCTGCAGAATCTTCTATGAGAACTGGTCCCCCATCTACCTATGCTGATCGNGTGTTTGCCAATGAGATTAACATTGCTGTCAAAACAACTGAGCAAAATTACTCCAACTACATGTTTCGAGAAGCCCTCAAGACTGGCTTTTATGATCTTCAGGCTGCTAGGGATGAGTATAGATTCTCATGTGGGGTTGGAGGTTACAATCGTGAGTTGGTGTGGCGGTTTATGGATGTGCAGACACGTCTTCTAGCACCTATCTGTCCACATTATGCNGAGTTTATTTGGAGGGAGATTTTGAAGAAGGATGGTTTTGTGGTGAAGGCAGGCTGGCCAACAGCTGATGCTCCTGATCTGACACTAAAGAGTTCCAATAAATATCTGCAGGACTCTATTGTTCTGATGAGGAAGTTGCTTCAGAAGCAACTTGTNGGCTCAAAGAAAGGAAATAAGAAAGGTGCTCCAGTTGTATCACTGACAGAAAACAAGATAACAGGCTTGATATATGTAAATGAACAATTTGATGGTTGGAAAGCGGAGTGCCTGAGTATTCTCCAGAACAAATTTAACAGGGATAGTCGAACTTTTGCCCCTGACTCAGAGATATTGGAGGCTTTACAACGGAGTTCTGTAGGTCAATCTTCCAATTTTAAACAAATTCAAAAGTTATGTATGCCTTTCTTGAGGTTTAAGAAGGATGAAGCAATTGCACTTGGGGCTCAAGCCCTGGATTTGAGATTGCCATTTGGTGAAATTGAGGTTCTTCAGGAAAACTTGGACTTGATCAAGAGACAGATAGGTCTANAAGATGTGGAAATTTTATCTGCAGCTGATGCTGATTCTTTGGCTAGAGCTGGACCTTTAGCTTCTCTACTAAATCAAAATCCTCCATCCCCTGGAAGTCCAACTGCCATCTTTTTAACTCAGTAGCTACTGAGTGCGTTCCTGGAAACTTCCCTTTTTCTTGAACTAGGACCTCCACAAATTGCAGATGTGAATCTCAAGCTAAAGATTGGAACCATCATGAGCAAAATCCATGTGACAGCAGGCTGAAAGTTTCTAATCCTGTATCTTCAAGAAGCTAATGCATTTACAATAATTAAGATCTTAGTACAGTTGCATCAGACTCACCAGATTCATTCATGGTGCTATTATCTCCAATGAAACCTTTCTGTATGCCTTAGATACATTTTTTGTTTTTTGTATTGTTTTTTACTGATGTTTCTGTCAGGAGAGCTGTTTTTGGCATGAAATTTTGTATTTGGACACCTGATTTTAAATTTCACATGTTTTTGTGATAAAATTATGCAGCTTGGGAATTTTAATTGGTGATTACAATAACATTAGAACCTTGAAGGACTTCCTGTGATTGTCTTCATAAACAAGGGTTGGTGAACTTGGAAGGCAGCTTCTTGTGGTAGTCGTCTACTTCTTAACTA

Protein Sequence

>Glyur001034s00029015.1
MLICGSSSAAHAHRHRHTRHLASALNRWLGLTHMASTEGGKSFARRDRLREIEVKVQKWWEEKEVFRSXPGDKPPEPGEKFFGNFPXPYMNGYLHLGHAFSLSKLEFAAAFHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQFGDPPVFPGEEQQQEEADAAAAAEDNFGDGAPPDNKFKGKKSKAAAKSGGQVYQWEIMRSVGISDAEISKFQDPYKWLSYFPPLAVEDLRAFGLGCDWRRSFITTDMNPYFXSFVRWQVRKLKSMGKIVKDVRYTIFSPLDGQPCADHDRATGEGVQPQEYTIIKMELVPPFPPKFKILEGKKVFLAAATLRPETMYGQTNAWVLPDGKYGAFEINENEVFVSSHRAALNLAYQNHSRVPQKPTCLLELTGHDLIGVPLRSPLSVNEIIYALPMLSILMDKGTGVVTSVPSDAPDDYMALHDLKSKPAFRAKYGVKDEWVLPFEXVPIIEVPQFGNKCAETVCLQMKIKSQNEKEKLAEAKKQTYLKGFTEGTMIVGEFAGRKVQEAKPLIRSKLLETGQAIVYSEPEKRVMSRSGDECVVALTDQWYITYGESEWKKLAEECLTXMNLYSDETRHGFEHTLSWLNQWACSRSFGLGTRIPWDDQFLVESLSDSTIYMAYYTIAHYLQNGDMYGSSESAIKPQQLTDDVWDYIFCGGPFPKSXDISPSLLDRMKLEFEYWYPFDLRVSGKDLIQNHLTFCIYNHTAIMSKHHWPRGFRCNGHIMLNSEKMSKSTGNFRTIRQAIEEFSADATRFSLADAGDGVDDANFVFETANAAILRLTKEIAWYEEILAAESSMRTGPPSTYADRVFANEINIAVKTTEQNYSNYMFREALKTGFYDLQAARDEYRFSCGVGGYNRELVWRFMDVQTRLLAPICPHYAEFIWREILKKDGFVVKAGWPTADAPDLTLKSSNKYLQDSIVLMRKLLQKQLVGSKKGNKKGAPVVSLTENKITGLIYVNEQFDGWKAECLSILQNKFNRDSRTFAPDSEILEALQRSSVGQSSNFKQIQKLCMPFLRFKKDEAIALGAQALDLRLPFGEIEVLQENLDLIKRQIGLXDVEILSAADADSLARAGPLASLLNQNPPSPGSPTAIFLTQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01034	57258	61805	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01869	LARS, leuS	EC:6.1.1.4	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006429 leucyl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0002161 aminoacyl-tRNA editing activity

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004823 leucine-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001034s00029015.1	PF00133.17	tRNA-synt_1	56	138	2.10E-07
Glyur001034s00029015.1	PF00133.17	tRNA-synt_1	231	793	4.70E-31
Glyur001034s00029015.1	PF08264.8	Anticodon_1	832	959	1.50E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.318
SRR1783600	control	39.499
SRR1783602	moderate drought stress	62.255
SRR1811619	moderate drought stress	61.686

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.653
DRR006520	Root Summer glycyrrhizin high producing strain	36.192
DRR006521	Root Winter glycyrrhizin high producing strain	38.775
DRR006522	Root Winter glycyrrhizin high producing strain	37.724
DRR006523	Root Summer glycyrrhizin low producing strain	50.027
DRR006524	Root Summer glycyrrhizin low producing strain	49.752
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.692
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.927

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	65.617
SRR2868004	Drought Stress (root)	64.629
SRR2967015	Control (root)	68.451

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.596
SRR9715740	Leaf	28.440
SRR9715741	Leaf	32.614
SRR9715739	Root	33.240
SRR9715742	Root	59.938
SRR9715743	Root	56.732

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.444
SRR8749028	MeJA induced 9h	52.985
SRR8749029	MeJA induced 9h	17.790
SRR8749030	Uninduced	11.663
SRR8749031	Uninduced	8.399
SRR8749032	Uninduced	10.177

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	55.794
SRR8400027	Control - Root	53.780