Gene detail information of Glyur001034s00029012


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G13120.24.00E-58Ribosomal protein S10p/S20e family protein
NRNP_001236439.13.38E-109uncharacterized protein LOC100526953 [Glycine max]
COGYP_007110358.13.00E-4030S ribosomal protein S10 [Geitlerinema sp. PCC 7407]
Swissprottr|Q9M4Y3|RR10_MESCR2.00E-8130S ribosomal protein S10, chloroplastic (Precursor)
trEMBLtr|C6T2U8|C6T2U8_SOYBN1.00E-109Putative uncharacterized protein {ECO:0000313|EMBL:ACU15986.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold010344188745078-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome


molecular_function

GO:0003723  RNA binding

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001034s00029012.1PF00338.17Ribosomal_S101092053.20E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control39.537
SRR1783600control39.894
SRR1783602moderate drought stress38.427
SRR1811619moderate drought stress38.383

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.411
DRR006520Root Summer glycyrrhizin high producing strain25.436
DRR006521Root Winter glycyrrhizin high producing strain33.708
DRR006522Root Winter glycyrrhizin high producing strain32.674
DRR006523Root Summer glycyrrhizin low producing strain67.953
DRR006524Root Summer glycyrrhizin low producing strain66.596
DRR006525Leaf Summer glycyrrhizin high producing strain153.646
DRR006526Leaf Summer glycyrrhizin high producing strain152.027

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)20.005
SRR2868004Drought Stress (root)22.182
SRR2967015Control (root)34.417

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf93.059
SRR9715740Leaf135.661
SRR9715741Leaf87.252
SRR9715739Root8.761
SRR9715742Root15.292
SRR9715743Root10.776

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h79.413
SRR8749028MeJA induced 9h136.337
SRR8749029MeJA induced 9h96.487
SRR8749030Uninduced70.730
SRR8749031Uninduced25.778
SRR8749032Uninduced39.420

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root39.312
SRR8400027Control - Root45.278

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved