Gene detail

Gene detail information of Glyur001034s00029007.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25140.1	7.00E-102	cytochrome P450, family 71, subfamily B, polypeptide 13
NR	KEH34017.1	0	cytochrome P450 family 71 protein [Medicago truncatula]
COG	YP_001522972.1	2.00E-34	cytochrome P450 [Azorhizobium caulinodans ORS 571]
Swissprot	tr\|O22307\|C71DB_LOTJA	0	Cytochrome P450 71D11 (Fragment)
trEMBL	tr\|M1ARA4\|M1ARA4_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400028537}

Sequence

Transcript Sequence

>Glyur001034s00029007.1
GCCCAAAAACAAAAATTAAATTAAAGGTAATAACATAGTAAGGGAAAAGAGCTCAATAATGTGTGGACTTAAGACTATTATATAAACAGACACTAGTAGGATGTTCATAGTACTACTTGGTTTCTTTTTCCATGGCTCTAATAGTCCTCTACTTGTCATTTCTTCTCTCCTTTGTCTTCTTAACCCTTATAGGGAAGAAACTCAAGAAAACCGACTCAACTTATAACCTACCCAAAGGGCCTAGAAAGCTCCCTATTATAGGAAACATACACAATCTTGTAAGCTCTCAACCCCATAGAAAATTAAGAGACTTGGCCATAAAATATGGACCCTTGATGCACCTTCAACTTGGGGAAGTTTCTACCGTTGTGGTTTCATCACCCGAGTGTGCTAAGGAGGTGATGAAAACCCATGACATCAATTTTGCAACTAGGCCTCAAATCCTTGCCACAGAAATAATGTCTTATAATTCCACAAATATAGCTTTTGCTCCTTATGGTAACTATTGGAGACAGCTAAGAAAAATCTGCACATTGGAGCTTTTGAGCCTAAAACGTGTCAACTCATTCCAGCCAATTAGAGAAGAGGTGTTGTCCAATCTTGTCAAATGGATTGATTCAGAGAAGGGATCATCGCCCATCAACCTCACACAAGCCTTGCTTTCTTCAACATACACAATTGTTTCAAGGGCTGCTTTTGGAAAGAAGTGCAAAGACCAAGAGAAGTTCATATCAGTAATCAAAGAATCAATAAAGGTTGCAGCTGGTTTTGACTTGGGAGATTTGTTTCCTTCTACTAAATGGCTTCAACGTGTCACTGGTTTGAGGCCAAAGCTTGAGAGGTTTCATAAACAAACTGATCAGATACTGGAAAACATCATCAATGAGCACATAGAGGCAAAATCAAATGCCAAAGACGAGCAAGGTGAAGCAGAAGATCTGGTAGATGTTCTGATGAAATATGAGGATGGCAGCAACCCGGACTTTTTCTTAACCAAAAACAATATGAAGGCCATAATCCTGACATCAGCAATGACCATAGATTGGGCAATGGTAGAAATGGTAAGGCATCCGAGAGTAATGAAGAAAGCACAAGCTGAGGTGAGAGAGGTTTTCAAAATGAAAGGAAAGGTTGATGAAAATTACATCAATGAACTCAACTATTTGAAATTAGTCATCAAAGAAACCTTGAGATTACACCCTCCAGCACCTCTTTTGCTTCCAAGAGAATGTGGTGAAGCACGCGAGATCAATGGTTATCACATACCGGTCAAAAGTAAGGTCATAGTCAATGCTTGGGCAATTGCAAGAGATCCAAACTATTGGACTGAACCAGAGAGGTTTTATCCTGAGAGATTCATGGACAGCACTATTGACTACAAAGGGAGTAATTTTGAGTACATTCCCTTTGGTGCTGGAAGAAGAATATGCCCAGGAAGCACATTTGGCTTGAGAAATGTTGAGGTGGCCCTTGCAATGTTGTTGTACCATTTTGATTGGAAGCTTCCCAGTGGGATGAGAAGTGAAGAATTGGACATGACTGAGGAATTTGGAGTCACAATGAGAAGAAAAGATGATCTTTTATTGAGGAATCCCAAGAAAACTGACACAATTCCAAATATACCACCAGGGCCATGGAAGCTACCTATCATAGGAAACATACCCCATCTTGTTGGCTCTCCACCCCACAGAAAATTAAGAGAATTGGCACAAAAATATGGACCCTTGATGCACCTTCAACTTGGTGAGGTCTTTCTAGTTATTGTTTCCTCAGCAGAATATGCCAGGGAGGTAATGAAAACCCATGATGTCATATTTGCATCCAGGCCTCATTCTATGACCTCAGAGATAATGTTTTATGACTCCACAGATATAGCCTTTTCACCTTATGGTGATTACTGGAGACAGCTTAGAAAGATTTGTAACATAGAGCTTTTGAGTATGAAAAGGGTCCAATCTCATTGGCCAATCAGAGAAGGAGAAATGGCCAACCTCATCAAAAGGATTGCTTCAGAAGAAGGATCAGTCATCAATCTCTCTCAAGCAGTTATATCACTGATGTACACCATCACTTCAAGGGCTGCATTTGGCAAGAAGTACAGGGAGCAAGAAGAGTTCATATCAATGGTAAGAGAGGTGTTGAAGCTAGCTGGGGGTTTCTACATTGGAGACTTGTTTCCTTCAGCTAAGTGGCTTCAGAACCTCACTGGGATGAGGCCTAAGCTTGAGATGTTGCACCAGAAAGTAGACAGAATACTGGAGAATATCATCAATGACCATAAAGAGGAAAAGTCAAGAACCACCAAAGAAGGTCTAGTTGAAGGAGAAGAAGATCTGATTGATGTTCTCTTAAAATTTGAGGATACTAGCAGTGACCAGGATTTTCACTTAACTAAAAGAAATATCAAGGCTATAATCTTTGATATCTTCACTGGTGGAAGTGACACTGCAGCAACTACTATCAACTGGGCAATGGCTGAGATATTGAAGGATCCAAGGGTCTTGAAGAAAGCACAAGATGAAGTGAGAGTGGTATTTGAAGGGAAAGGAAGGGTTGATGAAACTTGCATTGCTGAGCTCAAATACTTGAAAGCAGTCATCAAAGAGGTCCTTAGATTGCGCCCTCCTGGTCCTCTTTTGATTCCAAGGGAGTGTGGACAAGCTTGTGAGATTAATGGGTATCACATACCTGTCAAAAGCAGGGTCCTAGTCAATGCTTGGGCCATTGGAATGGATCCAAAATATTGGACTGACCCAGAAAGGTTTTTCCCTGAAAGGTTTCTTGATAGCTCTGTTGACTACAAAGGAACTGATTTTGAGTACATCCCATTTGGTGCTGGAAGGAGAATTTGCCCAGGCATGAACTATGGTGTTGCAAATGTTGAGTTGATCCTTGCTTTGTTGTTGTATCACTTTGATTGGAGGCTTCCCAATGGAATGAAAAAAGAGGACTTGGACATGACTGAGTTATTTGGAGCAATTGCAAACAGAGTTTCATCACAAAACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01034	13740	27816	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP71B13

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001034s00029007.1	PF00067.17	p450	34	480	1.30E-94
Glyur001034s00029007.1	PF00067.17	p450	498	947	2.00E-101

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.235
SRR1783600	control	0.222
SRR1783602	moderate drought stress	0.179
SRR1811619	moderate drought stress	0.158

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.140
DRR006520	Root Summer glycyrrhizin high producing strain	1.183
DRR006521	Root Winter glycyrrhizin high producing strain	30.525
DRR006522	Root Winter glycyrrhizin high producing strain	29.721
DRR006523	Root Summer glycyrrhizin low producing strain	3.985
DRR006524	Root Summer glycyrrhizin low producing strain	3.971
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.031
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.030

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.278
SRR2868004	Drought Stress (root)	0.476
SRR2967015	Control (root)	0.519

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.591
SRR9715740	Leaf	0.914
SRR9715741	Leaf	1.175
SRR9715739	Root	0.034
SRR9715742	Root	0.152
SRR9715743	Root	0.142

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.839
SRR8749028	MeJA induced 9h	8.369
SRR8749029	MeJA induced 9h	0.260
SRR8749030	Uninduced	8.429
SRR8749031	Uninduced	0.667
SRR8749032	Uninduced	0.386

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.170
SRR8400027	Control - Root	0.176