Gene detail

Gene detail information of Glyur001034s00029006.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G26300.1	1.00E-90	cytochrome P450, family 71, subfamily B, polypeptide 34
NR	XP_003600328.1	0	Cytochrome P450 [Medicago truncatula]
COG	YP_004303682.1	7.00E-31	cytochrome P450 [Polymorphum gilvum SL003B-26A1]
Swissprot	tr\|O81971\|C71D9_SOYBN	0	Cytochrome P450 71D9
trEMBL	tr\|G7IUZ1\|G7IUZ1_MEDTR	0	Cytochrome P450 family 71 protein {ECO:0000313\|EMBL:AES70579.1}

Sequence

Transcript Sequence

>Glyur001034s00029006.1
ATGGATCTTCAAATCCTCTACTTTACATCCATTTTCTCCCTTTTCATTTTTGTGTTTATGGCACACAAAACACTGACCAAGAAATCTGACTCAACTCCAAATTTACCACCAGGGCCATGGAAGCTACCCATCATAGGGAACATTCACAACCTTATTGGCTCACTTCCCCACCGTCGGCTAAGAGATTTATCAGCAAAATATGGACCCTTGATGCATCTGAAGCTTGGGGAGGTTTCTACCATTGTGGTTTCATCCCCAGAGTATGCTAGTGAGGTGTTGAAAACTCATGATCTTGTATTTGCATCAAGGCCTCCTATCCTAGCTTCAAAAATATTGACTTACGATTCTATGGGTATCTCTTTTGCACCTTATGGTGATTATTGGAGACAGCTGAGGAAGATTTGTACATTGGAGCTATTAAGCTCAAAACGTGTCCAATCTTTCCAACCAATCAGAGGGGAAGAGCTCAACAATCTCATCAAGTGGATTGCTTCAAAAGAAGGATCAACCATCAATCTCTCCAAAGAAGTGGCTTCAACAACATCCACAATCACTTCAAGGACAGCCTTTGGGAGGAAGTGCAGAGACCATCAAACATTCATATCAGTGGTAAACGAAGCCGTACAGGCTGCTGGAGGTTTTGACTTGGGGGATTTGTACCCTTCTGCTAAATGGCTTCAGCACATCTCTGGGTTGATGCCTAAGCTTGAGAAGTTGCATCAACAAGCTGACCGGATAATGCAGAACATCATCAATGAACATAGGGAGGCTGAGTCAAGGGCCAATGAAGACCAGGGTGAAGAAGTGGGGGAAGATCTTGTAGACGTGCTCTTGAAGCATGAGTTCTGCCTAAGTGATAATAGTGTCAAGGCTGTGATCATGGATGTCTTTGGAGGTGGAAGTGAGACATCATCTACTACCATAACATGGGCAATGGCAGAGATGATTAAAAACCCAAGAATAATGGAGAAGGTACAAGCTGAGGTGAGAGAGGTATTTAACAAAGAAGGGAAACCCAATGAAAGTGGTATAGAGAAACTAAAATATTTAAAATGTGTTGTGAAAGAGACATTGAGGTTACACCCTCCTGGTGCTCTCTTGCTTCCAAGAGAGTGTGGACAAGCTTGTGAGATCAAAGGGTATAATATACCTTTTAAAAGCAAGGTCATAATCAATGCTTGGGCAATTGGAAGAGATCCAAATCATTGGACTGAGGCTGAGAGGTTTAATCCTGAGAGAAGAATATGCCCGGGCATCAATTTTGGCTTGATCAACGTTGAGTTTCCACTTGCACTGTTGATGTATCACTTTGATTGGAAACTTCCCAATGGAATGAAAAATGAAGATTTGGACATGAGCGAGACGTTTGGAGCAGCAACACTTGACATCAACTTTGCAAATAGGCCCCTTTTTTTTGCTGCAGATGTTATAACATATGGTACTAAGGGCATAACATTTTTTTTTTATGGAAGTTATTGGAGGCAGATGAGAAAGATTTGCACCTTTGATTTTTTTACGCCAAGACGTGTTGAGTCATTTCAATCAATTAGGGAACAAGTTTTTTTAAATTTGATCAAGGAGATAGAAACAACAAAGGGGATCAATGGAAAAGCAGGTGAATTTTTTTTTGATGTCCTACTAAGGCTTCAGAAGCAGAACAACCTTGAGCATTTTTTTTCTGACAGCATTATCAAAGCAAACATGTTGGATATCTTCAGTGCCGGAAGTGGCTTTTTTTCCAAGACCTCAGAGTGGGCAATGTCAGAACTTGTCAAAAACCCTTTTTTTATGGAAAGAGCACAAGCTGAGATGCCTAATGGGAATAAGCCTGAAGAACTTGACATGACTGAAACATTTGGATTTTCGTTTCCACAACAAGCTAGCATGGGGTTGGAGCTTCATGTTCTCATATCTGCTATCCTTGGTTTCCTCTTGTTCATCATGGTAATCAAAATTGTTTGGAGTTCAAAAACTAAGAATGCAAACTCCAGATTGCCACCAGGGCCAAGAAAACTTCCTCTCATAGGAAACATGCACCAACTAGGACTAGCCTTGCCCCATCGTTCCCTAGCAGAATTGGCTCAGCAATATGGGCCTCTAATGCACATGCAGCTCGGTGAGCTATCATGCATAGTGGTGTCATCTCCAGAAATGGCTAAAGAGGTATTGAAAACACATGATCTCAACTTTGCAAACAGGCCTCCTCCTCTTCTTGCTGCTGAAGTAATAACTTATGGGGTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01034	2124	13702	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP71B34

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001034s00029006.1	PF00067.17	p450	36	413	1.80E-77
Glyur001034s00029006.1	PF00067.17	p450	542	604	2.50E-05
Glyur001034s00029006.1	PF00067.17	p450	666	736	3.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.005
SRR1783600	control	1.077
SRR1783602	moderate drought stress	0.521
SRR1811619	moderate drought stress	0.606

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.084
DRR006520	Root Summer glycyrrhizin high producing strain	0.047
DRR006521	Root Winter glycyrrhizin high producing strain	0.092
DRR006522	Root Winter glycyrrhizin high producing strain	0.074
DRR006523	Root Summer glycyrrhizin low producing strain	0.078
DRR006524	Root Summer glycyrrhizin low producing strain	0.078
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.207
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.252

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.612
SRR2868004	Drought Stress (root)	61.812
SRR2967015	Control (root)	32.193

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.291
SRR9715740	Leaf	0.220
SRR9715741	Leaf	0.437
SRR9715739	Root	0.090
SRR9715742	Root	0.380
SRR9715743	Root	0.387

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.166
SRR8749028	MeJA induced 9h	0.213
SRR8749029	MeJA induced 9h	0.147
SRR8749030	Uninduced	0.112
SRR8749031	Uninduced	0.236
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.087
SRR8400027	Control - Root	4.714