Gene detail

Gene detail information of Glyur001032s00027434

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G03510.1	2.00E-159	SPFH/Band 7/PHB domain-containing membrane-associated protein family
NR	XP_004505361.1	0	PREDICTED: erlin-2-B-like [Cicer arietinum]
trEMBL	tr\|K7N0Z0\|K7N0Z0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G03070.2}

Sequence

Transcript Sequence

>Glyur001032s00027434.1
ACGGAAGGTGCTATTAAGTGTGATTCGTCGAGGACGGTTATTGCGAGCGAAACACGCTAAACTTGTTCTGTACCACNACCCTCCCCAAACGCAAAGAATCGAAAAGACAAAAGGTGTGTGAGTGTGTCAGAGTTGTTCACCGCCACCGCCATGGATTCGCAGCAACCAAGAGCCACACCGCAAGGCCGTGACTCCACCGCCATTATGTTGCCCTTCCTCTCATTCCTTGCCATTGCCGCTTTCGTGTTGGTTCCTTCAGCTTCACCATCCTTCAAAAATAGCTTATCAATTCTGCACCAAGTACCTGAAGGCCATGTGGGGGTATATTGGAGAGGTGGTGCACTTCTGAAAACAATCACAGAGCCAGGTTTCCATCTAAAGATGCCTTTATTAACTCAGTATGAGCCTGTTCAGGTGACACTTCAGACAGATCAGGTGACAGACATACCATGCGGTACTAAAGGAGGTGTTATGATCGCTTTTGGGAAGATCGAGGTTGTTAACCGACTCCACAAGGAATTTGTCTACGAAACATTGCTCAACTATGGTGTGCATTATGATAAGACATGGATATATGACAAGATTCACCATGAGATCAATCAGTTCTGCAGCTCTCATAGTCTTCAACAAGTATACATTGATGTGTTTGATCAGATTGACGAAAAGATGAAAGATGCTCTACAAGTTGACTGTACCCGCTATGCTCCAGGCATTGAGATCATTGGTGTCCGTGTCACAAAGCCAACTATTCCAGATAGCATAAAACGCAACTTTGAACAAATGGAAGAGGAGCGTACTAAGGTCTTAATTGCTATTGAGAGACAGAAAGTAGCTGAGAAGGAGGCAGAGACTATGAAGAAGATGGCTATTAGTGAAGCTGAGAAAAATGCCAACGTTAGCAAGATCCTCATGGAACAAAAATTGTTGGAAAAAGATAGTGCTAGAAGACAGGAAGAAATTGAGAATGAAATGTACCTAGCACGTGAAAAGAGCCTGGCAGATGCAGATTTCTACCGTGTAATAAAAGAAGCTGAAGCAAACAGGTTGAAGCTTACCCCTGAATTTCTTCAGCTAAAATTCATCGAGGCCATTTCTAATAATACAAAGATTTTCTTTGGGGACAAGGTTCCAAATATGATTTTGGATCAAAGGCTGCTTGGAAACTTCCTTCAAGAAGTTTCTAGAGGGGTAGCTACAAAGGTGAAAGCAGATATCTGAACTCTTTCCTTTGGAGCTCAGATGACTNATAGTTATCTTCTACAGTACACAATGAGAAGAAAGATACCTTTGTTTCACAAACCTTTTCTTTTTCTTTTAACGTGGAGAAAACGTAGATAATAGGTGGTCCTTTTTGATACAGTGGAAACTANAAAATTGGGCATAGGGGACAATTGTATCAGGTTCTTAATCTTTGTTACATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01032	90275	93680	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001032s00027434.1	PF01145.20	Band_7	50	232	2.50E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.479
SRR1783600	control	1.493
SRR1783602	moderate drought stress	1.678
SRR1811619	moderate drought stress	1.694

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.593
DRR006520	Root Summer glycyrrhizin high producing strain	3.655
DRR006521	Root Winter glycyrrhizin high producing strain	1.569
DRR006522	Root Winter glycyrrhizin high producing strain	1.527
DRR006523	Root Summer glycyrrhizin low producing strain	3.606
DRR006524	Root Summer glycyrrhizin low producing strain	3.653
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.383
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.269

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.116
SRR2868004	Drought Stress (root)	2.050
SRR2967015	Control (root)	1.779

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.752
SRR9715740	Leaf	0.521
SRR9715741	Leaf	0.582
SRR9715739	Root	0.282
SRR9715742	Root	1.057
SRR9715743	Root	0.719

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.911
SRR8749028	MeJA induced 9h	3.348
SRR8749029	MeJA induced 9h	5.183
SRR8749030	Uninduced	0.358
SRR8749031	Uninduced	0.319
SRR8749032	Uninduced	0.473

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.085
SRR8400027	Control - Root	1.428