Gene detail

Gene detail information of Glyur001030s00028208

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39700.1	5.00E-17	expansin A4
NR	KEH35550.1	6.72E-51	expansin A10 [Medicago truncatula]
Swissprot	tr\|O22874\|EXPA8_ARATH	7.00E-38	Expansin-A8 (Precursor)
trEMBL	tr\|A0A072VBI6\|A0A072VBI6_MEDTR	3.00E-51	Expansin A10 {ECO:0000313\|EMBL:KEH35550.1}

Sequence

Transcript Sequence

>Glyur001030s00028208.1
GCCGTGATTTAAGGGAAATTTTAAGAGAGAAAAAAAGACAAAACGAAATACAACCCTTTTCATACTTAACGACCACTTGAAAAAATAAACATACATAATAAAATTACACGAGATGTAAACAGTTGAGGAATGCATGTGCCAAGTGGGACCGTAGATTAAGCAGTTGGTAAGTGTAACCGAAACATTTGCATGTGCGCCTTGATTCGTGCTCTACGTACTGAGAAAAAAAATTGTGAAAGAACCAGTTTTTTGTGTGTGGTTTTGGCTCTCTCTTTAGACCTGACTTGTCTCTTTCGAGCATGAGACCCCACATAACCTATGCTTAACTTTCCTATATAAAGCAAACCAACCTTAGCTAAGCATTAAGCACCAACAAGCACTAAAAGCTCTCCTATCTTAAAAATCCCTTTGCCCCCTCAACTTCTCTAAGCACTAGTAGTACCACACAATGGCAATTGCAGCAACCTCTTCCATCTCTCTTCTCTTCTTTCTTCTCAATCTATGCCTCAGGGGCACTTATGGTGACTATGGAGGAGGATGGCAAGGTGGCCATGCCACATTTTATGGTGGAGGAGATGCATCAGGCACAATGGGAGGGGCTTGTGGTTATGGCAATTTGTACAGCCAAGGGTATGGGACAAACACTGCTGCACTCAGCACTGCTCTTTTCAACAATGGCATGAGTTGTGGGTCTTGCTACGAGATGAGATGTGACACTGACCCCAAATGAGTCCCCTGTGTGAAGAAAGGAGGGATCAGGTTCACCATCAATGGTCACTCTTACTTTAACTTGGTTTTGATCACAAATGTTGGTGGAGCTGGAGATGTGCATTCTGTGTCCATCAAGGGGTCTAAGACTGGGTGGCAAACTATGTCTAGGAACTGGGGACAGAATTGGCAGAGCAATTCCTACCTCAATGGCCAGAGCCTCTCTTTCCAAGTCACAACCAGTGATGGCAAAACTCTAACCAGCAACAACGTTGTTCCTGCTAATTGGCAATTTGGACAGACNTTTGAGGGGGCACAGTTTTAGAAACCTAAAAAGTTCCCATTTTGAAGTTAAACAACTTGTTGTGTGTAGTATATGGCATTGCTCGGTTGTTGTTACAGTTGAAAAAGTGTGAGGAAAAGGAAAGGTAGATTTAGGAGTTGTTCGTTACAGGCCAACATGGCCTCTAATGCTGTGGTGGCTCTATGGCACCCGCTAGGCCTTTATATATTTTATAATTGTTTTTTGTTTCAGAGATGCCTTTTGATGAATCAAAGGCGATGATGATCTCAATAGCCTTGTATATTTGATCCCCAAAATGGAATTAAACCAATTTGGGGGGAGTTTTTATCAATTTGATGATGCTTTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01030	72060	74238	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009664 plant-type cell wall organization

cellular_component
GO:0005576 extracellular region

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001030s00028208.1	PF03330.13	DPBB_1	66	90	1.10E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	740.978
SRR1783600	control	737.399
SRR1783602	moderate drought stress	54.428
SRR1811619	moderate drought stress	53.890

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	101.039
DRR006520	Root Summer glycyrrhizin high producing strain	100.674
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	31.471
DRR006524	Root Summer glycyrrhizin low producing strain	31.537
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.226
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.139

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	81.855
SRR2868004	Drought Stress (root)	18.083
SRR2967015	Control (root)	22.656

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	80.062
SRR9715740	Leaf	8.789
SRR9715741	Leaf	34.215
SRR9715739	Root	45.949
SRR9715742	Root	11.071
SRR9715743	Root	16.896

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.430
SRR8749028	MeJA induced 9h	35.829
SRR8749029	MeJA induced 9h	4.148
SRR8749030	Uninduced	0.093
SRR8749031	Uninduced	0.169
SRR8749032	Uninduced	0.166

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	761.659
SRR8400027	Control - Root	659.624