Gene detail

Gene detail information of Glyur001030s00028207.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40620.1	3.00E-62	Basic-leucine zipper (bZIP) transcription factor family protein
NR	XP_004502831.1	0	PREDICTED: transcription factor RF2b-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q6S4P4\|RF2B_ORYSJ	1.00E-72	Transcription factor RF2b
trEMBL	tr\|A0A072V2G2\|A0A072V2G2_MEDTR	0	BZIP transcription factor {ECO:0000313\|EMBL:KEH35548.1}

Sequence

Transcript Sequence

>Glyur001030s00028207.1
GCTTTGTATGTAATGAAGCATTTATCAAGTAACCTACTTCTAAATAGGTTTTTAGACTTTTATACATGTTACACTCCATTGTGTTGTGATGGCGGACGTTTTTAAGTAGTAGTAATTTGCATCTGTGAATCTGACGACCCAAAACGACACCGTAGAGGGTTCCCTTTAAGTACCTTTATACAGTAGGCACTGCAGAAGGCACCCAGCGCAACAAGGCAAGTGTGTGAGAGCGGAGAGGGAAAACGGAGCAGTAACTAACCGGATCAGAAAAGAAGGCGGCGTTCAAAACGATGTCGTTCCCGTACCACCGTCGATCCCAATCGGAGGTGCATTTCCGAATCCCCGACGACTTCGACCTCGAAGTGGATCCCTTCGACGCCCCTCCGCTCCATTTCCAACAACAAGATCCGCCACCACACCACCACGACGACCTCCTCTCCGCCTACATTGATTCCGACAATTCTGGATCCAAACACCAATCTCCCTCCTCCTCCTCCAAACCCGGCGGCATTGCGGAGGAGGACAGCACCAAAACCACCGGCAGGCCCGGTCACCGTCGCAGCAACTCCGCCGATGCCTCTTCTTCCTTATTATCGGAGGGAATCGAGGCTAAGAAAGCAATGTCCCCTGATAAGCTCGCCGAATTGTGGATCGTTGATCCTAAGCGAGCTAAGAGGATTCTGGCCAATCGCCAATCTGCCGCGCGCTCGAAAGAGAGGAAAGCCTGTTACGTGTTGGAGCTTGAGAGAAAAATCCAAATGCTTCAAACGGAAGCAACCACTCTTTCTGCTCAATTGAATCTTTTCCAGAGAGATACAACTGGTCTAACTACTGAAAATACCGAATTGAAGCTTAGGTTACAAGCCATGGAGCAACAAGCTAAGTTATGTGATGCTCTAAATGAAGCACTGAAGAAAGAAGTTGATAGGCTCAGGATGGCTACTGGAGAGATGACAAATCATGCTGATACTTATGGTTTGGGAATGCATCAACTTTCATATTCTCAAGCTTCGTCTTTCCTGCATCAGCCACAACGTGGGCCGAATGAACTTCAGGCCATACAAATGCCGCAGTTGCATTCATTCTCATCTAATGTATCCACTCCCCACCAGCCTCTGTTTGATCTAGCCACTCCGTATGATTTGTCAGCCATGTTGTCAAGTGATTCTCTCGGCCAATTTCAGGGGCTGGACATAGGCCACAGGGTTTCTCATGCTCCAATGCCTGATGGCCCCTCCATTTCTGTTAATAAAATCAACAATGCCTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01030	63182	66361	+

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP
EAR motif-containing Proteins	bZIP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001030s00028207.1	PF00170.16	bZIP_1	125	182	9.60E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.162
SRR1783600	control	13.484
SRR1783602	moderate drought stress	8.753
SRR1811619	moderate drought stress	8.788

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.847
DRR006520	Root Summer glycyrrhizin high producing strain	4.433
DRR006521	Root Winter glycyrrhizin high producing strain	4.946
DRR006522	Root Winter glycyrrhizin high producing strain	4.765
DRR006523	Root Summer glycyrrhizin low producing strain	2.879
DRR006524	Root Summer glycyrrhizin low producing strain	2.989
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.519
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.445

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.742
SRR2868004	Drought Stress (root)	10.224
SRR2967015	Control (root)	12.045

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.763
SRR9715740	Leaf	1.670
SRR9715741	Leaf	1.921
SRR9715739	Root	7.597
SRR9715742	Root	6.113
SRR9715743	Root	6.277

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.365
SRR8749028	MeJA induced 9h	6.718
SRR8749029	MeJA induced 9h	7.037
SRR8749030	Uninduced	2.892
SRR8749031	Uninduced	1.808
SRR8749032	Uninduced	1.780

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.870
SRR8400027	Control - Root	13.847