Gene detail

Gene detail information of Glyur001030s00028205

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05270.2	7.00E-56	Chalcone-flavanone isomerase family protein
NR	AEO17326.1	3.79E-114	chalcone isomerase [Arachis hypogaea]
Swissprot	tr\|Q8VZW3\|CFI3_ARATH	3.00E-69	Probable chalcone--flavonone isomerase 3
trEMBL	tr\|G3LT02\|G3LT02_ARAHY	1.00E-114	Chalcone-flavonone isomerase family protein {ECO:0000256\|RuleBase:RU361158}

Sequence

Transcript Sequence

>Glyur001030s00028205.1
CGAAAAGAAAAACATTAACCACAAAAAATAGAGGTAGCAACGAGCAAATGATGAACTCACAGGTACATCAACTCGCTCTACCTACCCGCCACCTTGTTTTCGTCCTTGTCAGGAAGGTCAAAGGTGTCTAAAACAAAGAGCATTATATAGTGACTGATCCATCATTTCCTACACCTCACCCTTCTCTCTAAAAAATCCACCCAAAATTCTCCCACCCCATCTCTCTCTATCTTCTTCTCCAGCAAAGACAACTACTATGGCTAGTGAAGTTGTAATGGTTGATGAGATCTCCTATCCTTCCAAGATTACTACTACCAAGCCCCTATCTCTGTTGGGTCATGGGCTCACCGACATGGAGATCCACTTTCTCCAAGTGAAATTCTATACAATCGGGGTTTATTTGGACCCTGAAGTAGTCAGGCACTTGCAACAGTGGAAAGCTCCAGTGGAGAAGGTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGCGCACAGTATGGTGTTCAGATTGAGACTGCTGTGAGGGACCGGTTGGCAGCTGATGACAAATATGAGGAGGAAGAAGAAGAAGCTTTGGAAAAAATTGTTGAGTTTCTCCAGTCTAAATACTTCAAGAAACATTCAGTGATCACATATCATTTCCCAGCAAATTCTCCAACTGCTGAGATTGTAGTATCTCTGGAGGGGAAAGAAGACTCCAAGTTTGTAGTAGAGAATGCCAATGTGGTAGAGACCATCAAGAAATGGTACCTTGGTGGNTCAAGTGCGGTGTCTCCCTCAACCATTTCATCTTTGGCTAGCACTCTCTCACAGGAATTGTCCAAGTGAAGAGAACTTGGAGTTGTGTAATAATCTTGAGGATCTATGTTTTGTGTTGCAATGCTGTTGTATTTGGAACTTTCTCCACACAATGTTTGCGGAATTCTGNTTTTTAACTTAAAGGAATAATAATGTTAATCTTGTGACATGCCAAATTCTTGATGTTTTATAAATGGCTATTATTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01030	57837	59730	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009813 flavonoid biosynthetic process

molecular_function

GO:0016872 intramolecular lyase activity

GO:0045430 chalcone isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001030s00028205.1	PF02431.10	Chalcone	13	61	3.10E-09
Glyur001030s00028205.1	PF02431.10	Chalcone	62	185	3.10E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	101.473
SRR1783600	control	101.042
SRR1783602	moderate drought stress	65.114
SRR1811619	moderate drought stress	65.397

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	121.478
DRR006520	Root Summer glycyrrhizin high producing strain	117.702
DRR006521	Root Winter glycyrrhizin high producing strain	171.411
DRR006522	Root Winter glycyrrhizin high producing strain	168.172
DRR006523	Root Summer glycyrrhizin low producing strain	107.448
DRR006524	Root Summer glycyrrhizin low producing strain	108.742
DRR006525	Leaf Summer glycyrrhizin high producing strain	51.722
DRR006526	Leaf Summer glycyrrhizin high producing strain	51.405

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	457.651
SRR2868004	Drought Stress (root)	543.343
SRR2967015	Control (root)	416.246

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	222.657
SRR9715740	Leaf	120.759
SRR9715741	Leaf	219.684
SRR9715739	Root	262.094
SRR9715742	Root	227.751
SRR9715743	Root	223.554

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	198.853
SRR8749028	MeJA induced 9h	240.726
SRR8749029	MeJA induced 9h	238.249
SRR8749030	Uninduced	540.719
SRR8749031	Uninduced	434.201
SRR8749032	Uninduced	452.417

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	300.046
SRR8400027	Control - Root	260.389