Gene detail

Gene detail information of Glyur001030s00028195

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G56370.1	0	Leucine-rich repeat protein kinase family protein
NR	NP_001239730.1	0	probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like precursor [Glycine max]
COG	YP_004775215.1	9.00E-54	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LRT1\|Y3804_ARATH	0	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 (Precursor)
trEMBL	tr\|I1KB74\|I1KB74_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G14770.1}

Sequence

Transcript Sequence

>Glyur001030s00028195.1
GCCGTTAATAAAAACTGAATATTACTACTTCATTGTGCGTGCTCAGTGCTCACACAGAACAGCACACACAGACATTAGCGTGAGAGAGAGAGAGAGACGTTACTTTTCAGCGCCGGTGAGGAACTTGCGGTCACCNGTCGGAATTTCCGTTGAGTTTGTACATTTCCGATGGGTGCCTGAGAAAATGCGNGTGCTATCCAACATGAGAGCTCTTCTTCCCGTGTGCCTGTTCTCGCTGCTTCTCGTGGCGGTAGTGACCGCCGTGAGCCCCTCCTTAAACGACGACGTTCTGGGGTTGATTGTGTTCAAAGCCGACATACAAGATCCGAAGGGAAAGCTTGCATCTTGGAACGAAGACGACGAGAGTGCGTGTGGGGGTAGTTGGGTTGGCGTGAAATGCAACCCCAGATCCAACAGGGTTGTGGAGCTTAACCTCGATGGGTTCTCTCTAAATGGAAGAATAGGTCGTGGCCTTCAAAGGTTGCAGTTTCTCCGCAAGCTCTCTCTTAGGAACAACAATCTCACTGGGGGCATAAACCCCAACATTGCCCGTATCGATAACCTTCGTGTCCTTGACTTGAGTGACAACAATCTCTCAGGTGAGGTTCCTGATGAGTTCTTCCGACAATGTGGGTCTCTACGACTTGTTTCCTTGTCGAAGAACAAGTTTTCTGGGAGCATTCCTTCCAGCTTGGGCTCTTGTTCAGCTCTTGCTACACTTGACCTCTCTTTTAACCAGTTTTCGGGTTCTGTCCCTTCTGGGGTTTGGACTTTGAGTGGACTTAGGTCTCTGGATTTGTCTGATAACTTGTTGGAAGGTGAGATTCCAAAAGGGGTTGAGGCGTTGAAGAATCTGAGGAGCATTAGCTTGGCGAGGAATAGCTTTTCTGGGAAGATTCCAGATGGATTTGGGAGTTGCTTGCTTTTGAGGTCTGTTGATTTCGGAGAGAATTCACTCTCCGGTGACATCCCTGGCGATTTGAAGGAGCTGGTGTTGTGTGGTTACTTTAGTTTGCGTGGGAATGCTTTCTCAGGAGAGGTTCCTGAGTGGATTGGAGAGATGAAGGGCCTTGAGACATTGGACCTCTCAAGGAATAGATTTTCCGGTCAGGTGCCAAGCTCTATTGGGAATCTTGTGTCATTGAAGATGTTGAATCTTTCTGCTAATGGTTTCACTGGTAATCTTCCTGAGTCTATGGTGAATTGCACAAACCTTCAGGCCTTGGATGTCAGCCAGAATTCCATGTCCGGAGGTCTTCCATCGTGGATTTTCGGATCAGATTTGGAGAAGGTTGTTGTATCAGAAAAGAGAACCATTGGTGGTGGTGCGAAGAGCCCTTTGTATTCCTTGGCTAAGGTTGCAGTTCAAAGTCTCCAGGTCTTGGATTTATCTCACAATGCATTTTCTGGTGAAATCACGGCTGCCATTGCAGGTTTAAGCAGCTTGCAGCTTCTGAATTTGTCCAATAACGTCCTGAGAGGTCCTATTCCGGCTGCAATTGGTGATTTGAAAACATGTTCTAGTCTTGATTTGAGTTATAATAAGCTAAACGGAAGNGTTCCTTGGGAAATTGGAGGAGCTATGTCCTTGAAAGAACTGATATTGGAGAAGAACCTCCTAACTGGGAAAATCCCAACTTCAATTGAGAACTGCTCTTCGTTAACAACTTTGATTCTATCGCAGAACTGGCTGAGTGGGTCAATACCTGTAGCAGTTGCAAAACTTACCAAGCTGCAAACTGTGGACTTATCATTCAACAACCTTACTGGAAACCTTCCCAAGCAATTGGCCAACCTTCCCAATCTTCTGACCTTCAATTTATCTCACAACAACCTTCAGGGTGAACTGCCTGCTGGTGGTTTTTTCAACACCATTTCGCCTACCTCCGTTGCTGGCAATCCATCTCTTTGTGGCTCTGCAGTGAACAAATCATGCCCCGCTGTCCTCCCAAAGCCTATTGTTCTGAATCCCAATACTACTACTGACTCCGACCCAGGTTCACTTCCTCCAAATTTGGGTCACAAAAGAATCATCCTCAGCATTTCAGCACTCATAGCCATTGGTGCAGCTGCTGTCATTGTAATTGGTGTCATTGGCATCACTGTTCTCAACCTCCGTGTCCGGTCCTCCACATCTCGATCTGCAGCTGCCCTCGCATTTTCTGCAGGGGATGAATTCAGCCGTTCGCCAACAACAGACGCCAACTCCGGCAAGCTTGTCATGTTCTCAGGTGATCCCGATTTCAGCTCNGGAGCACATGCTTTGCTTAACAAGGATTGTGAGCTTGGGCGTGGAGGGTTCGGGGCCGTGTACCAAACAGTTCTCGGAGATGGGCGTTCAGTGGCTATAAAGAAGCTCACCGTATCGAGCCTCGTCAAGTCTCAAGAAGACTTTGAAAGGGAAGTGAAGAAATTAGGAAAAGTCAGACACCAAAATCTTGTGGAACTTGAAGGTTATTATTGGACTTCATCACTGCANCTCCTCATATACGAGTATGTCTCCGGTGGTAGCCTGTATAAGCATCTCCATGAAGGGTCAGGTGAAAACTTCCTCTCTTGGAATGAGAGGTTCAACGTGATTCTCGGGACAGCAAAGGCCTTGGCTCACTTGCACAACTCCAACATCATTCACTACAACATCAAGTCAACCAATGTCCTTATCGATAGCTATGGCGAACCCAAAGTAGGCGATTTCGGCCTCGCAAGGCTGCTACCAATGCTCGACCGTTACGTCTTGAGCAGCAAGATCCAGAGTGCGCTCGGCTACATGGCACCGGAGTTTGCCTGCAAAACGGTGAAGATTACNGAGAAGTGCGATGTGTACGGATTCGGAGTCTTGGTGTTGGAGATCGTTACGGGGAAGAGGCCCGTGGAGTACATGGAGGACGATGTGGTGGTGCTTTGTGACATGGTGAGAGGAGCATTGGAAGAAGGGAGGGTGGAGGAATGTGTTGATGAGAGGCTCCAAGGGAAGTTCCCAGCNGAGGAAGCGATTCCTGTGATGAAGCTAGGCTTGATATGTACTTCACAAGTGCCATCTAATAGGCCTGACATGGGAGAGGTAGTTAACATATTGGAGCTAATAAGGTGCCCCTCAGAAGGACAGGAAGAGTTGTTGGGATGAATTTAAAAAAACTTGCCAAAATTACTTAACTAGGAGGATAGAACAAATGGGTTATCCGGCGAAGAAGAATCCGGTTTTTACTTATTTATTGCACACAGATGAATTGATTGTTGGAAAAATGTTATCTTTTCATTGTAATTGTTTTTTCTTCCCTTGTTAGTCTCTCTAGTAAGATTTCTCTGTTAAGTGTTATGCTACAATTAGGATTATGCCGGATTCTTTTTCACCGGGTTCCGTTTTGGATGATCCCCGTTTGAAAATCGTTGTTGCTGTTGCTCAATTTACTGATGAATGATGATG

Protein Sequence

>Glyur001030s00028195.1
MRVLSNMRALLPVCLFSLLLVAVVTAVSPSLNDDVLGLIVFKADIQDPKGKLASWNEDDESACGGSWVGVKCNPRSNRVVELNLDGFSLNGRIGRGLQRLQFLRKLSLRNNNLTGGINPNIARIDNLRVLDLSDNNLSGEVPDEFFRQCGSLRLVSLSKNKFSGSIPSSLGSCSALATLDLSFNQFSGSVPSGVWTLSGLRSLDLSDNLLEGEIPKGVEALKNLRSISLARNSFSGKIPDGFGSCLLLRSVDFGENSLSGDIPGDLKELVLCGYFSLRGNAFSGEVPEWIGEMKGLETLDLSRNRFSGQVPSSIGNLVSLKMLNLSANGFTGNLPESMVNCTNLQALDVSQNSMSGGLPSWIFGSDLEKVVVSEKRTIGGGAKSPLYSLAKVAVQSLQVLDLSHNAFSGEITAAIAGLSSLQLLNLSNNVLRGPIPAAIGDLKTCSSLDLSYNKLNGXVPWEIGGAMSLKELILEKNLLTGKIPTSIENCSSLTTLILSQNWLSGSIPVAVAKLTKLQTVDLSFNNLTGNLPKQLANLPNLLTFNLSHNNLQGELPAGGFFNTISPTSVAGNPSLCGSAVNKSCPAVLPKPIVLNPNTTTDSDPGSLPPNLGHKRIILSISALIAIGAAAVIVIGVIGITVLNLRVRSSTSRSAAALAFSAGDEFSRSPTTDANSGKLVMFSGDPDFSSGAHALLNKDCELGRGGFGAVYQTVLGDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTSSLXLLIYEYVSGGSLYKHLHEGSGENFLSWNERFNVILGTAKALAHLHNSNIIHYNIKSTNVLIDSYGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECVDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELLG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01030	20891	25625	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001030s00028195.1	PF08263.7	LRRNT_2	31	73	3.20E-09
Glyur001030s00028195.1	PF13855.1	LRR_8	103	161	6.50E-08
Glyur001030s00028195.1	PF00560.28	LRR_1	200	218	0.9
Glyur001030s00028195.1	PF00560.28	LRR_1	223	245	1.1
Glyur001030s00028195.1	PF13855.1	LRR_8	295	353	2.00E-08
Glyur001030s00028195.1	PF12799.2	LRR_4	396	431	7.40E-07
Glyur001030s00028195.1	PF13855.1	LRR_8	468	527	1.30E-08
Glyur001030s00028195.1	PF00560.28	LRR_1	540	560	1.1
Glyur001030s00028195.1	PF07714.12	Pkinase_Tyr	697	964	2.90E-42
Glyur001030s00028195.2	PF08263.7	LRRNT_2	31	73	3.20E-09
Glyur001030s00028195.2	PF13855.1	LRR_8	103	161	6.50E-08
Glyur001030s00028195.2	PF00560.28	LRR_1	200	218	0.9
Glyur001030s00028195.2	PF00560.28	LRR_1	223	245	1.1
Glyur001030s00028195.2	PF13855.1	LRR_8	295	353	2.00E-08
Glyur001030s00028195.2	PF12799.2	LRR_4	396	431	7.40E-07
Glyur001030s00028195.2	PF13855.1	LRR_8	468	527	1.30E-08
Glyur001030s00028195.2	PF00560.28	LRR_1	540	560	1.1
Glyur001030s00028195.2	PF07714.12	Pkinase_Tyr	697	964	2.90E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.243
SRR1783600	control	10.125
SRR1783602	moderate drought stress	6.970
SRR1811619	moderate drought stress	6.633

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.825
DRR006520	Root Summer glycyrrhizin high producing strain	10.529
DRR006521	Root Winter glycyrrhizin high producing strain	0.368
DRR006522	Root Winter glycyrrhizin high producing strain	0.303
DRR006523	Root Summer glycyrrhizin low producing strain	6.229
DRR006524	Root Summer glycyrrhizin low producing strain	5.686
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.430
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.120

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.216
SRR2868004	Drought Stress (root)	32.429
SRR2967015	Control (root)	31.763

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.789
SRR9715740	Leaf	2.025
SRR9715741	Leaf	2.562
SRR9715739	Root	10.268
SRR9715742	Root	11.686
SRR9715743	Root	10.937

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.744
SRR8749028	MeJA induced 9h	1.922
SRR8749029	MeJA induced 9h	1.489
SRR8749030	Uninduced	0.154
SRR8749031	Uninduced	0.039
SRR8749032	Uninduced	0.195

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.735
SRR8400027	Control - Root	29.472