Gene detail

Gene detail information of Glyur001029s00026995

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G27100.2	Ypt/Rab-GAP domain of gyp1p superfamily protein
NR	XP_003596653.1	GTPase-activating protein gyp7 [Medicago truncatula]
trEMBL	tr\|G7IJN4\|G7IJN4_MEDTR	Ypt/Rab-GAP domain of gyp1p superfamily protein {ECO:0000313\|EMBL:AES66904.1}

Sequence

Transcript Sequence

>Glyur001029s00026995.1
CAATTCTTCAGTTGACAAGTTTTTGTTTCTGGGTTTGCTTGATCTTTTCAAAGGGGTCCAGTTTCTGAGTGCTGTCAACAAGGGTTGTTACTTGTTGGTAGCAAAAATCATTGCTTTTTGTTTCAATTGGTGTTTTTTGTTTTCCAGAGAGCTCTTTTGGCTGTTTGGGATGTGGAGAGATCCAGGAGTTCCAGCTGATTCTTTCTATGAAACCCGCCCCGACTGCACCGATGTTCCCATTTCTCGATTTAAGATCAAGGCTGGTAAAACACTAAGTCCAAGAAAATGGCATGCTGCATTTACTCCAGAAGGGTATTTGGATATAGGCAAGACTCTAAGACGAATCTACCGAGGGGGAGTCCATCCATCAATTAGGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTGAGGAAAGAGATCAGATAAGACAACGCCGACGGATGCAATATGCTACATGGAAGGAAGAATGCCGCCAGATGTTTCCTCTTATTGGAAGTGGTAGATTTATCACAGCACCTGTAATTAGTGAAGATGGCCAGCCAATTCAAGATCCGTTGGTTCTGTTAGAAACAAATCCAGCCAAGGGATTGGCTGAACTTCCTCAAGATAATAAGAGACCTTCAAGTATAGATACTGGAAATAATTTAGAAAATGTGACAGACAAGAGAGTAGTTCAGTGGATGTTAACTCTCCATCAAATAGGTCTTGACGTGGTTCGCACTGATAGGACATTGGTTTTTTATGAGAAGCCAGAAAACTTGGCAAAACTATGGGATATTCTTGCAGTTTATGCTTGGATAGATAAAGAGGTTGGGTACGGTCAAGGAATGAGTGACCTTTGCTCCCCCATGATAATTCTTCTCGATGATGAAGCAGACGCATTTTGGTGCTTTGAGCGTCTGATGCGCAGACTTCGAGGCAATTTCAGATGCACTGATCGCTCTATTGGGGTGGAGGCTCAACTAAGTAATTTGGCTTCAATTACTCAAGTAATTGATCCAAAACTTCATAAACATTTAGAGCATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGGATGCTAATGGTTCTGTTTCGTCGAGAATTTTCCTTTTGTGATTCATTGTACCTATGGGAGATGATGTGGGCTTTAGAATATGACCCTGACTTGTTCTTGATGTATGAAGAACCTCAATCAGCTACTAAAAAAGCTGAGGGCTATAAAGGAAAAGCAAAGTCAATACGACAATGTGGAAAATATGAGAGAGAAAATATGAAAAATGGAGCAAAGAATGCTGAAGCTCCTCTTCCTATATCTATTTTCCTTGCTGCTAGTGTGTTGAAATATAAAAGTAGAATACTACTCCAGGAAGCGCAAGGCTTGGATGATGTTGTCAAGATATTGAATGACACAACAGGAAATCTAGATGCCAAAAAGGCTTGCAATGGGGCCATGAAACTTCACAAGAAATACTTGAGAAAGGCCAAGAAAGCCTAGCACCAGATATATTCATTGATTTTTCCCCCCTTTGGGCTGATCAATTGATGTGTTGCTTCCTACACACTATCATGTTATTCATTGGGAGACAATAATGGAGTCCATCAAATTTGGAATGCGGTTTGCAGAATTGTTTTAAAAAAAAAAAGGGGGATCCAAGTATCCAACCCTCAAATTCTCTTTTGAGAACTGTTGTTTGTGAAATTAATTTCATTCTTTTTTTTTTGTGTATCCAAAAGAACAAGTGAGATTGTGTATCAAAATAGAATTTTGTACAACTATTTGTACTATATTTGTATTTGTATTTGTATCACAAAAGGGAAAAACAAGTGCAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01029	46708	53421	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001029s00026995.1	PF00566.13	RabGAP-TBC	179	329	5.00E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.027
SRR1783600	control	9.121
SRR1783602	moderate drought stress	7.930
SRR1811619	moderate drought stress	7.810

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.614
DRR006520	Root Summer glycyrrhizin high producing strain	13.386
DRR006521	Root Winter glycyrrhizin high producing strain	8.120
DRR006522	Root Winter glycyrrhizin high producing strain	8.020
DRR006523	Root Summer glycyrrhizin low producing strain	13.592
DRR006524	Root Summer glycyrrhizin low producing strain	13.398
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.269
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.176

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.723
SRR2868004	Drought Stress (root)	22.449
SRR2967015	Control (root)	21.532

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.927
SRR9715740	Leaf	6.601
SRR9715741	Leaf	9.088
SRR9715739	Root	2.589
SRR9715742	Root	9.308
SRR9715743	Root	7.891

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.008
SRR8749028	MeJA induced 9h	16.294
SRR8749029	MeJA induced 9h	8.429
SRR8749030	Uninduced	13.687
SRR8749031	Uninduced	7.780
SRR8749032	Uninduced	5.884

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.587
SRR8400027	Control - Root	29.131