Gene detail

Gene detail information of Glyur001029s00026993

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20570.1	2.00E-37	early nodulin-like protein 9
NR	KHN27964.1	1.34E-112	Early nodulin-like protein 1 [Glycine soja]
Swissprot	tr\|Q8LC95\|ENL3_ARATH	4.00E-29	Early nodulin-like protein 3 (Precursor)
trEMBL	tr\|V7BUT6\|V7BUT6_PHAVU	3.00E-100	Uncharacterized protein {ECO:0000313\|EMBL:ESW21704.1}

Sequence

Transcript Sequence

>Glyur001029s00026993.1
AAGCAAAGCATAAACCCATGCACCAATTTAATTTCTTAGATGAAAGATTCAGAGGGACTCAGACTCATTACAATGATAGAGAACTTATGCTTTGCACCAGCATCAAAGTAAACCCAAAGAGAGGAGAGAATAAGAAAAAGTTTCAAAAGCTTCCCTCCCACAGTTTGTAAAGTTTTTATGCATCTGATACCTACAAAAACCCCTCAATGATGTTCCATCTCATTGCATCACTCTAGCTAGCTTCAACATTTCCAGCATTTTGGTTTGCAATACCCACTTGTCCTTTCTCAGTTTCCTCNTTGATCCTTTCCAATGGCTACCATCATTTTAAGGTCTAATGAAGTAGTTCATGCCTTAGGCTTGTTCTGTCTCTTCCTGTTTATGTACAAGGGTGATGCCTATCAATTTGTAGTTGGAGGCCAAAAGGGTTGGAGTGCTCCAAGTGACCCCAATTCCAACACTTACAATCAATGGGCAGAAAAGAGCCGATTTCAAGTAGGAGACTCCCTAGTGTTCAATTACCCTTCTGGCCAAGACTCAGTGATTCAAGTAAGTAGCCAAGACTATGCCAGTTGCAACACTGATGCATATTCTGAGAAATTCTCTGACGGCCACACAGTAATCAAACTCAATCAATCGGGGCCTCACTTCTTCATAAGTGGAAACAAAAACAGCTGTCTCAAGAATGAGAAGCTAGTGGTGATTGTGATGTCAGACAGGACCAACAACAGAAACTCAAACACCAACCAAACAACCACTCCTCCTTCTGTTTCTCCTTCTCCTTCTCCTTCTGCTTCACCATCAATCTCAACAAAGTCATTAGCTCCTTCACCAGCACCTGTTCAGCAAGTGGTTCAATCTCCACCACCAGGGACTGTGGGCACTACTCCACCACCACCCCAACAAGAGGCTTCATCTCCACCACCAGGGACTGGGGTGACAAACCCAACTCCAGCTCCTGTTAGTGAACCTCCTCCTCCTAATGCTGCTTCTTCAATCTTGGTCAGCTTTGTTGGTTCTGCTGGAGCATTCATGGCTTCAGTAATGGTTTTTTTCTAAGTGGGGTATATATGAGTGATTGAGTATAATTTTCTATAAATTCATTTTTTTTCCTCATGGATTCCTATACTTAGAGTTCAGTATTGTTGAATTGGGTCTTTGGTCCAAAGTTGGGGTACCGTTTGATATTTGTTTGTGAGAACTGAGAAATAAGCTGATAATATGTACCCTTTGTGTGCTTCTTACATGATGATGTAAGAGTATTCTATACGTTGAAATAAATAAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01029	43047	45109	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0009055 electron carrier activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001029s00026993.1	PF02298.12	Cu_bind_like	40	123	2.70E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.859
SRR1783600	control	21.085
SRR1783602	moderate drought stress	19.041
SRR1811619	moderate drought stress	18.623

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.918
DRR006520	Root Summer glycyrrhizin high producing strain	38.096
DRR006521	Root Winter glycyrrhizin high producing strain	0.521
DRR006522	Root Winter glycyrrhizin high producing strain	0.505
DRR006523	Root Summer glycyrrhizin low producing strain	41.193
DRR006524	Root Summer glycyrrhizin low producing strain	41.490
DRR006525	Leaf Summer glycyrrhizin high producing strain	98.812
DRR006526	Leaf Summer glycyrrhizin high producing strain	98.341

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.200
SRR2868004	Drought Stress (root)	26.052
SRR2967015	Control (root)	23.663

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.915
SRR9715740	Leaf	24.642
SRR9715741	Leaf	12.466
SRR9715739	Root	5.912
SRR9715742	Root	19.722
SRR9715743	Root	16.269

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.059
SRR8749032	Uninduced	0.044

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.959
SRR8400027	Control - Root	18.403