Gene detail information of Glyur001029s00026991 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27080.1 | 0 | PDI-like 5-4 |
| NR | XP_004487592.1 | 0 | PREDICTED: protein disulfide-isomerase 5-4-like isoform X1 [Cicer arietinum] |
| COG | YP_004315638.1 | 9.00E-08 | rhodanese-like protein [Sphingobacterium sp. 21] |
| Swissprot | tr|Q9T042|PDI54_ARATH | 0 | Protein disulfide-isomerase 5-4 (Precursor) |
| trEMBL | tr|I1M3J6|I1M3J6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G36450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01029 | 31087 | 40057 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001029s00026991.1 | PF13850.1 | ERGIC_N | 6 | 88 | 3.20E-19 |
| Glyur001029s00026991.1 | PF00085.15 | Thioredoxin | 140 | 237 | 6.20E-16 |
| Glyur001029s00026991.1 | PF07970.7 | COPIIcoated_ERV | 275 | 455 | 1.00E-29 |
| Glyur001029s00026991.2 | PF13850.1 | ERGIC_N | 6 | 88 | 3.00E-19 |
| Glyur001029s00026991.2 | PF00085.15 | Thioredoxin | 126 | 217 | 5.20E-15 |
| Glyur001029s00026991.2 | PF07970.7 | COPIIcoated_ERV | 255 | 435 | 9.50E-30 |
| Glyur001029s00026991.3 | PF13850.1 | ERGIC_N | 6 | 76 | 1.90E-13 |
| Glyur001029s00026991.3 | PF00085.15 | Thioredoxin | 126 | 223 | 5.90E-16 |
| Glyur001029s00026991.3 | PF07970.7 | COPIIcoated_ERV | 261 | 441 | 9.80E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.957 |
| SRR1783600 | control | 4.008 |
| SRR1783602 | moderate drought stress | 2.483 |
| SRR1811619 | moderate drought stress | 2.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.622 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.927 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.757 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.816 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.237 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.231 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.474 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.812 |
| SRR2868004 | Drought Stress (root) | 9.006 |
| SRR2967015 | Control (root) | 7.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.471 |
| SRR9715740 | Leaf | 2.234 |
| SRR9715741 | Leaf | 1.588 |
| SRR9715739 | Root | 0.654 |
| SRR9715742 | Root | 1.787 |
| SRR9715743 | Root | 1.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.139 |
| SRR8749028 | MeJA induced 9h | 9.937 |
| SRR8749029 | MeJA induced 9h | 6.742 |
| SRR8749030 | Uninduced | 5.444 |
| SRR8749031 | Uninduced | 2.088 |
| SRR8749032 | Uninduced | 2.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.362 |
| SRR8400027 | Control - Root | 8.913 |