Gene detail information of Glyur001025s00025605 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14470.1 | 1.00E-98 | NB-ARC domain-containing disease resistance protein |
| NR | XP_003615749.1 | 0 | NBS-LRR resistance protein [Medicago truncatula] |
| COG | YP_001522505.1 | 1.00E-08 | WD repeat-containing protein [Acaryochloris marina MBIC11017] |
| Swissprot | tr|Q7XA39|RGA4_SOLBU | 0 | Putative disease resistance protein RGA4 |
| trEMBL | tr|G7K728|G7K728_MEDTR | 0 | Disease resistance protein RGA4 {ECO:0000313|EMBL:AES98707.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01025 | 79389 | 82612 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001025s00025605.1 | PF00931.17 | NB-ARC | 155 | 443 | 5.40E-72 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.652 |
| SRR1783600 | control | 4.532 |
| SRR1783602 | moderate drought stress | 5.752 |
| SRR1811619 | moderate drought stress | 5.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.450 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.489 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.462 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.524 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.153 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.218 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.087 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.533 |
| SRR2868004 | Drought Stress (root) | 17.168 |
| SRR2967015 | Control (root) | 18.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.873 |
| SRR9715740 | Leaf | 1.955 |
| SRR9715741 | Leaf | 3.547 |
| SRR9715739 | Root | 0.446 |
| SRR9715742 | Root | 6.213 |
| SRR9715743 | Root | 5.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.274 |
| SRR8749028 | MeJA induced 9h | 3.719 |
| SRR8749029 | MeJA induced 9h | 0.508 |
| SRR8749030 | Uninduced | 0.467 |
| SRR8749031 | Uninduced | 0.212 |
| SRR8749032 | Uninduced | 0.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.502 |
| SRR8400027 | Control - Root | 20.199 |