Gene detail

Gene detail information of Glyur001025s00025595

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30080.1	9.00E-107	ZIP metal ion transporter family
NR	XP_003615761.1	0	Zinc transporter [Medicago truncatula]
COG	YP_007467549.1	6.00E-09	putative divalent heavy-metal cations transporter [Desulfocapsa sulfexigens DSM 10523]
Swissprot	tr\|O64738\|ZIP6_ARATH	1.00E-157	Zinc transporter 6, chloroplastic (Precursor)
trEMBL	tr\|G7K740\|G7K740_MEDTR	0	ZIP zinc/iron transport family protein {ECO:0000313\|EMBL:AES98719.1}

Sequence

Transcript Sequence

>Glyur001025s00025595.1
GTCCACGTCATTTATCACTCTCTAATAGCTCTTCTACTCTTTATTCAACCTTCTTCTTCAACAATAACGTCTTCTTTCAGTTCACATTCACTTCCCTCCACCACTTCTCCCTCTCTCTCTTACTCTATCTCTTCTCACATCGACATGGCGGCGGCGTGCGCGACGGACTTGGGCCGAGCGACGTCGTGCCGCGACGGAGCGGCGGCGGCACACCTGAAAGTGATATCAATCTTCGTAATCTTCCTCACAAGCGCGGTCGGCATGACGTTGCCGGTTCTCCTGGCCCGTGTTTTCCGGGGAAAACCGTTATACGACAAGGCAGTTGTTCTAATCAAGTGCTTCGCGGCAGGGGTAATCCTCTCGACCTCTTTAGTCCACGTGCTCCCCGACGCGTATGCCGCACTCGCGGACTGCCACGTGGCATCGCGACACCCCTGGAAGGACTTCCCCTTCGCGGGACTCGTGACCCTCGTGGGGGTCCTCCTCGCGCTGTTCGTGGACCTGGCCGCAAGCTCACACGTGGAGCACGCGCAGTACGCGCCGGTTGGCGCGGTGGAGAAGGAGTCGGCCGTGGAACTCGGGGGAGGTTGCGGTGGCGGGGAATTAGGGGAAGTTGAGAGAGGGGAAGAGTTGGTTAGGCTGAAGCAGAGGTTGGTGTCGCAGGTTCTAGAAATTGGGATAATCTTTCACTCTGTGATAATTGGGGTTACTATGGGGATGTCTCAGAATGTTTGCACCATTCGGCCACTCGTTGCTGCTTTGGCGTTTCATCAGATATTTGAAGGCATGGGTCTCGGTGGCTGCGTCGCTCAGGCGGGATTTAGCTTTGGAACAATGGCATACATGTGCTTCATGTTCTCAGTGACAACCCCAATGGGGATAGTTTTGGGGATGGCATTGTTCTCACTGACAGGTTATGATGATAGTAGCCCAAATGCGTTAATCATGGAAGGGTTACTAGGTTCAATTTCTTCGGGGATTCTGATTTACATGGCTCTTGTTGACCTCATAGCTCTTGATTTCTTTCACAACAAGCTTATGAACTCTGATCCACGCTTGAAAAAGATATCTTTTGTTGCCTTAACCCTTGGTTCNGCTGCAATGTCTATTCTCGCCCTATGGGCTTGAAATTTTTTGTAACCTTGCGCTCAAATCATGTGTTGCCCCATAACAAATTAGTGTTTAAAGGTATCAACAAAGATCAGAAAGTGATCGAAAAATGAAATGTGATGTGAGGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01025	19942	22968	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0030001 metal ion transport

GO:0055085 transmembrane transport

GO:0071577 zinc II ion transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005385 zinc ion transmembrane transporter activity

GO:0046873 metal ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001025s00025595.1	PF02535.17	Zip	71	372	4.30E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.223
SRR1783600	control	6.260
SRR1783602	moderate drought stress	11.554
SRR1811619	moderate drought stress	11.398

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.892
DRR006520	Root Summer glycyrrhizin high producing strain	23.765
DRR006521	Root Winter glycyrrhizin high producing strain	4.011
DRR006522	Root Winter glycyrrhizin high producing strain	3.938
DRR006523	Root Summer glycyrrhizin low producing strain	33.481
DRR006524	Root Summer glycyrrhizin low producing strain	33.685
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.804
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.789

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	66.153
SRR2868004	Drought Stress (root)	119.979
SRR2967015	Control (root)	127.595

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.196
SRR9715740	Leaf	38.736
SRR9715741	Leaf	42.568
SRR9715739	Root	28.403
SRR9715742	Root	55.251
SRR9715743	Root	46.550

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.938
SRR8749028	MeJA induced 9h	2.878
SRR8749029	MeJA induced 9h	2.670
SRR8749030	Uninduced	5.406
SRR8749031	Uninduced	1.719
SRR8749032	Uninduced	2.277

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.204
SRR8400027	Control - Root	33.291