Gene detail

Gene detail information of Glyur001024s00028118

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25550.1	5.00E-107	Cleavage/polyadenylation specificity factor, 25kDa subunit
NR	XP_007147700.1	8.35E-145	hypothetical protein PHAVU_006G147400g [Phaseolus vulgaris]
Swissprot	tr\|Q8GXS3\|CFIS2_ARATH	5.00E-136	Pre-mRNA cleavage factor Im 25 kDa subunit 2 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|V7BNZ0\|V7BNZ0_PHAVU	3.00E-145	Uncharacterized protein {ECO:0000313\|EMBL:ESW19694.1}

Sequence

Transcript Sequence

>Glyur001024s00028118.1
AACTACAAGCATCTAGATTTGGGGGGGAGCGGGCTACCGCCACCGGCCCACGATGGTCTTGAGATTTAGTTGCGTCTTGGGAGAGACAGACTGAAACAATGAAACGATGCAAACAGTCATACAATTTTCCAACATTCAAACTGAGTAACTGACACTGATTCAGCTCAAACTTTCTACTCTTCTTTCCGCTTCTATTTTCCTTCGGGTTACTTCCCTCAACACATACACAACAACACAAAAGAGGAGAAGAGAGTAGTGAGAAGATGGTGTCATCTCAGGTGGTGAATACNTACCCGTTGTCCAGCTACACCTTCGGTACCAAGGAGCCCAAGATGGAGAAGGACACCTCCGTCGCTGATCGTCTCGCTCGCATGAAAGTCAATTATATGAAAGAAGGGATGAGGACCAGTGTGGAAGGAATTTTACTGGTACAAGAACACAATCATCCCCATATACTTCTTCTGCAAATTGGGAATACGTTTTGCAAACTCCCTGGTGGTCGACTCAAGCCAGGAGAGAATGAAATTGAGGGTTTGAAGAGAAAGTTGACTAGCAAGCTTGGTGCTAATTCACAAGCCCTGGTGCCTGACTGGCAGATAGGTGAATGTGTNGCAATCTGGTGGAGGCCAAATTTTGAAACCATAATGTATCCATACTGTCCTCCTCATATAACAAAACCCAAGGANTGCAAAAAGCTGTTCCTTGTTCACTTATCTGAGAGGGAATACTTTGCAGTACCCAAAAACTTGAAACTGCTTGCTGTTCCACTGTTTGAACTCTATGACAATGTTCAGAGATATGGGCCAGTTATATCTACCATTCCTCAGCAGCTTTCCAGATTCCAGTTTAAAATGATAACTAATTGAGCGAAATTGGAGGCCTACATGCTCTGATATGATACTACTTCCTTCCATTTGTTATTCTAAGTAGGACTGATTTGATACATTACTATCATTGCGTAGACTGGTTAGAGAACTGAGTTTTTAAGTTAGTTTCTGAATAGATTTGTAACTTCATGACACGGTTTGTCTGTATCAATTCATTGGATTATGGGTTGATGTCTTGTGATTGTCAACCCAAGATGGGAATCAACTAGTAGGCTTAACCTAAAGCCCAAGTGGAAATCGATGTGATCATAGTGTGTCTTGGTCTCATGATCTGTTTCTCTGCCCTGCTCGGGTTGCCAATCTTAGAATGGAAAGGTAAAGCATCATTGCAAGTTTTTCAGAGGCTAAAATTATACACTTGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01024	90219	93681	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006378 mRNA polyadenylation

cellular_component
GO:0005849 mRNA cleavage factor complex

molecular_function

GO:0003729 mRNA binding

GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001024s00028118.1	PF13869.1	NUDIX_2	6	193	3.10E-84
Glyur001024s00028118.2	PF13869.1	NUDIX_2	6	112	3.60E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.628
SRR1783600	control	21.371
SRR1783602	moderate drought stress	12.200
SRR1811619	moderate drought stress	12.111

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.225
DRR006520	Root Summer glycyrrhizin high producing strain	27.984
DRR006521	Root Winter glycyrrhizin high producing strain	19.140
DRR006522	Root Winter glycyrrhizin high producing strain	18.809
DRR006523	Root Summer glycyrrhizin low producing strain	32.755
DRR006524	Root Summer glycyrrhizin low producing strain	32.442
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.983
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.079

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.951
SRR2868004	Drought Stress (root)	46.855
SRR2967015	Control (root)	42.344

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.995
SRR9715740	Leaf	43.225
SRR9715741	Leaf	48.689
SRR9715739	Root	8.865
SRR9715742	Root	19.799
SRR9715743	Root	18.414

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.006
SRR8749028	MeJA induced 9h	17.486
SRR8749029	MeJA induced 9h	14.147
SRR8749030	Uninduced	8.603
SRR8749031	Uninduced	4.341
SRR8749032	Uninduced	5.832

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.831
SRR8400027	Control - Root	47.170