Gene detail

Gene detail information of Glyur001024s00028103

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62020.1	1.00E-64	heat shock transcription factor B2A
NR	XP_003555375.1	1.71E-165	PREDICTED: heat stress transcription factor B-2a-like [Glycine max]
Swissprot	tr\|Q9SCW4\|HFB2A_ARATH	3.00E-87	Heat stress transcription factor B-2a
trEMBL	tr\|I1NGR6\|I1NGR6_SOYBN	6.00E-166	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G29610.1}

Sequence

Transcript Sequence

>Glyur001024s00028103.1
CCCGCATGCGAAGGAAGAAGTTTCGCGATAAAAAAGAGGTAACGTAGTAGTTTCTTCTTCTCCTTCCTTTCAATATATTTTCCGTCTCCCTCGTCTTTTTCTTTCTTCCGTTTCATTCTCTTTGCATTTCCACGTGAACCTTCTAGAACTATCACCATAGAAACAACAATTCTTCTTCCATCTTCATTCTCTCTCTGTAACCTCTGGTTGGCGCTGGATTCTTCTCCATGGCTCCGCCGGCGGAACACAACGGCCACTCCTCCACCGGCGAGTCTCAGAGATCCACTCCGACGCCGTTTCTCACTAAGACCTACCATCTCGTCGACGACCACGCCTTCGACGACGTGATTTCATGGAACGACGCTGGATCATCCTTCATCGTCTGGAACCCTACGCTTTTCGCTAGGGATTTGCTTCCCAAATATTTCAAGCACAACAATTTCTCAAGCTTCGTTCGCCAACTCAACACTTATGGATTCAGAAAAGTTGTGCCTGATCGGTGGGAATTCTCGAACGAGTGTTTCCGGAGAGGCGAGAAACGGCTTCTCTGTGAGATTCAGCGACGAAAGGTCCTCTCACCGTCGCCGCCGGCGTCTTCCAATGCCGGAGCAACTGCGACCGTGGCGGTTCCGTCGCCGCTGCCGATGGCAACGATTCCGACGGCGAAGCCGATCGTGTCGCCGTCGAACTCCGGGGAGGAGCAGGTGGTTTCTTCGAACTCGTCGCCGTTGAGAGCGCCGGCGGAGCTGTTGGACGAGAACGAGAGGTTGAGAAGGGAGAACATTCAGTTGACGAAGGAACTCGAGGAGATGAGATCGCTCTGCAACAATATATTCAATCTCATGTCGAGTTACGCAAACGCCCAAGCAAACGGCGGCGAGCAAGGTAGGAATTGTGACTCCATGGCGGCGAGGACGCTTCATTTGATACCGGCGAAGCGGTGCGTCGGCGAGGATGATGCGGCGGTGGCGGTGGAGGAGACGAACCCGAAGCTGTTTGGGGTGGCGATCGGTACGAAGCGAGCGAGAGGGGAAGGACGAAGTGTGGAGGATGATACGGTGTTGAGCCTGCATCATCCGGTTTATGCGGATGTTAAATCGGAGCCGTTTAGTTTCCGGGAAGGCCAAAACAAAAAAATGCTGTGGCTGAATCAGTGCCATAGAGCGAATCAGAGTGTGTGTAATTGACACATGACGTTGTACGAGTTAGGGAACATGTTAGGCTAAGTTATGGGCGGCGTAGGGAATCTGAGTCCTGAAGCATGGAGAAGCACGTGTCCTATGTGGCATGTGCGTCGTTAACCGTTTGGGACAGTTTTCGCAGAAGCTTCTCAGAAGAAAACGATACTTTCTCGTCCTTTCCTTTCCTCTTTCTTTTTTTTTTTCCCTAATTTTTATGCCTGCCAAATATATTGGGCTTGATTAGAGTTACCCTTGCTAGTTGACAGCAGTGTTCTAAACTCAATTGTAATTTCGTTTTGTTCGTTTGCCAGCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01024	12835	14419	-

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009408 response to heat

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001024s00028103.1	PF00447.12	HSF_DNA-bind	24	114	4.90E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.800
SRR1783600	control	1.777
SRR1783602	moderate drought stress	4.017
SRR1811619	moderate drought stress	4.016

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.985
DRR006520	Root Summer glycyrrhizin high producing strain	24.678
DRR006521	Root Winter glycyrrhizin high producing strain	63.528
DRR006522	Root Winter glycyrrhizin high producing strain	61.922
DRR006523	Root Summer glycyrrhizin low producing strain	41.572
DRR006524	Root Summer glycyrrhizin low producing strain	41.580
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.747
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.741

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.925
SRR2868004	Drought Stress (root)	9.911
SRR2967015	Control (root)	8.500

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.528
SRR9715740	Leaf	3.656
SRR9715741	Leaf	6.271
SRR9715739	Root	6.317
SRR9715742	Root	4.762
SRR9715743	Root	4.639

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.506
SRR8749028	MeJA induced 9h	37.977
SRR8749029	MeJA induced 9h	52.125
SRR8749030	Uninduced	9.400
SRR8749031	Uninduced	43.397
SRR8749032	Uninduced	77.283

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.502
SRR8400027	Control - Root	3.934