Gene detail

Gene detail information of Glyur001024s00028098.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G07280.1	0	Leucine-rich repeat transmembrane protein kinase
NR	XP_004496591.1	0	PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Cicer arietinum]
COG	YP_004775215.1	6.00E-59	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LYN8\|EXS_ARATH	0	Leucine-rich repeat receptor protein kinase EXS (Precursor)
trEMBL	tr\|A0A072VNY9\|A0A072VNY9_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH43739.1}

Sequence

Transcript Sequence

>Glyur001024s00028098.1
ATGGCTGTTGTTCCCTTCAACGTTGTACTCTCGTACCTTGTCATGCTCCTCTACCTATGTTTCGCCATTGCAGACCATAGTGAACAAAACCCAGAAAAAATCTCCCTCCTTTCCTTCAAAGAGGGTCTCCAAAACGCTCACGTTTTGGCTTCGTGGCACCCGGCAACACCGCACTGCGACTGGGTTGGCGTCACGTGCCAACTCGGCCGAGTCACCTCGCTCTCTCTTCCGTCTCTCTACCTCCGAGGCAAACTCTCTCTGTCTCTATCCTCACTCTCCTCCCTCACCGTCCTCAACCTCGAAGACAATCAGTTTTCCGGCGAAATTCCCGGCGAACTCTGTGGGTTGGTTCAGCTGCAAACTCTCAGACTCGGCTCCAACTCGTTCGCCGGAAAAGTCCCACCGGAGCTGGGTCACTTGACGGAGCTCCGCACACTCGACCTCTCCGGCAATGCCCTCGCCGGAGAGATACCGGAAAGCTTCGGGAACTTGACCCGTCTCCAGTTCCTGGACCTCAGCAACAACTTTCTCTCAGGTTCTCTCCCGATAACTCTCTTCACCGGTGCCGTGTCTTTGATTTCGGTTGATATCTCGAACAACACGTTTTCCGGCGAACTCCCGCCGGAAATCGGGAACTGGAAGAACCTCACTGCACTTTACGTGGGGATTAACAAGTTGTCGGGTACATTGCCTAAGGAAATTGGTGAGCTTTCGAAGCTTGAAATCTTGTATTCACCTTCCTGTTTGATTGAAGGTCCATTGCCTGAGGAAATGGCAAAGCTCAAGTCGTTGACCAAGCTTGACCTTTCTTACAACCCCTTGAGGTGTTCAATCCCAAAGTTCATTGGGGAGTTGCAGAACTTGAAAATTTTGGACCTTGTCTTTGCTCAGCTTAATGGGTCGGTGCCAGCTGAGCTGGGAAACTGCACAAACCTGAGGTCTGTGATGCTTTCTTTCAATTCACTTTCTGGGTCACTCCCTGAGGAGCTTTCTCAGCTCCCAATAATAACTTTTTCAGCTGAGAAGAATCAGCTTCATGGGCCTTTGCCTTCTTGGCTTGGAAAGTGGAGTAATGTTGATTCTCTCTTGCTTTCTGCTAACCGCTTTTCTGGGGTGATTCCTCCTCAGCTTGGGAATTGCTCTGTGATGGAGCACCTCAGTTTGAGCAGCAACTTGTTGACAGGTCCCATACCTGAGGAGCTTTGTAATGCTGCCTCACTTTTGGAGATTGATCTTGACGACAACTTCCTTTCTGGTACAATCGAGAAAGAATTTGTCAAGTGTAAGAACCTCACCCAGTTGGTTTTGATGAACAACCAAATTGTTGGTCCCATACCAGAGTACCTTTCCGAGCTCCCCTTGATGGTGCTGGACCTAGACTCCAACAATTTTAGTGGGAGAATACCTTCTAGCCTGTGGAATTTACCAACACTGATGGAATTCTCTGCTGCCAATAACCACTTGGAGGGTTCTCTTCCTGTGGAGATTGGGAATGCAGTTATTCTAGAGAGGCTTGTCCTTAGCAATAATCGGCTGATAGGTACTATACCTAAGGAGATTGGAGGTCTCCCAAGTCTTTCAGTGATTAATTTGAATGGAAATATGCTTGAAGGGAGTATTCCAGATGAGCTTGGTGACTGCATTTCCCTTACTACATTGGACCTTGGAAACAATCAACTCAATGGTTCCATTCCTGAGAAACTTGTGGAACTAAGCCAATTACAGTGCCTGGTTCTTTCTCACAATAATTTGTCCGGGTCTATTCCTGCCAAGGAATCATCTTATTTTCGACAACTTACCATCCCCGACCTGAGCTTTGTGCAACACCTTGGTGTGTTTGATCTTTCTCACAATAGATTGTCTGGCACCATACCTGATGAACTGGGGAGCTGTGTAGTGGTTGTGGATCTATTGCTCAGCAACAACATGCTTTCTGGGAACATTCCAAGATCGCTCTCGCGCTTGACGAATCTAACAACTTTGGATTTGTCTGGCAACTTCTTGTCTGGTTCTATTCCACAGGAACTTGGAGATGCTGTCAAACTCCAGGGCTTATATCTGGGACAGAACCAACTCTCAGGTAGCATCCCCGGAAGTTTTGGAAAGTTGAGCAATTTGGTGAAGTTGAATTTGACAGGAAATAAGTTGGCTGGTCCCATTCCAACCAGTGTTGGGAACATGAAGGAGTTGACTCACTTGGACTTGAGCTCTAATGAGCTCAGTGGGGAGCTTCCATCCTCTCTGATTGAGACAATGAATTTGAGTGATAATTGCTTCAGTGGGAACCTGCCACGGTCTTTGGGAAATCTTTCCTACCTGACGAATTTGGATCTTCATAGAAACATGTTGACCGGAGAGATTCCTTTAGACCTTGGGAATCTTATGCAGCTGGAGTATTTTGATGTTTCAGGTAATCAGCTATCCGGAAAGATTCCAGAGAAGTTATGCAGCCTAGTCAATTTGAATTACCTAGATTTGTCTCAAAACAGATTGGAAGGGCCTATACCCAGAAGTGGTATTTGCCAAAACCTATCCAGAGTTAGATTTGTGGGGAACAGAAATCTTTGTGGCCAGATGTTGGGTACAGATTGTCAGGACAAAGTCATCGGTAGATCGGCATTGTTCAATGCATGGCGGCTTGCGGGGATTGCCATCACAGTCATATTAATAACCGTAAGCATTGCTTTTGTACTTCATAGGTGGATTACCAAGAGGCAAGATGATCCTGAGGACCTTGAGGAGCGCAAACTAAACAGTTATGTGGATCAGAATCTTTATTTCTTGAGCAGTAGCAGATCAAAGGAACCTTTGAGTATCAACGTAGCAATGTTTGAGCAGCCTCTTCTGAAATTGACTCTGGTCGATATCATTGAAGCTACCGACAACTTCAGCAAGACAAACATAATTGGAGATGGAGGTTTTGGAACCGTGTACAAGGCCACTCTACCAAATGGAAGAACAGTTGCTGTGAAGAAGCTTAGTGAAGCTAAAACGCAGGGACACCGTGAGTTCATGGCTGAAATGGAGACCTTGGGGAAGGTGAAGCATCAAAACCTTGTTGCATTGCTTGGATATTGCTCAATTGGTGAGGAGAAACTCCTAGTCTACGAATACATGGTAAATGGGAGCCTAGATCTTTGGTTGAGAAATAGGACTGGTGGCCTTGAAATCCTTGGCTGGAACAAACGTTACAAGATCGCGACTGGTGCGGCTCGAGGGTTAGCTTTCCTTCATCATGGTTTCATACCCCACATCATTCACAGGGATGTTAAAGCCAGCAACATTTTACTGAATGAAGATTTCGAGCCAAAGGTTGCGGACTTTGGACTGGCGAGGCTGATCAGCGCTTGCGAGACACATGTCACCACCGATATTGCCGGAACATTTGGTTACATTCCACCAGAGTATGGGCAGAGTGGGAGGTCCACAACAAGAGGAGATGTCTACAGTTTTGGTGTCATTCTGCTTGAACTGGTGACCGGAAAGGAGCCAACTGGACCGGATTTCAAAGAGATTGAAGGTGGGAACTTGGTTGGATGGGTTAGTCAGAAGATCAAGAAGGGGCAGGCTGTTGATGTTCTTGATCCAACAGTTCTTGATGCAGATTCAAAGCAGATGATGCTTCAAATGCTGCAGATTGCTTGTGTTTGCCTCTCTGATAACCCTGCTAACAGGCCTACTATGCTTCAGGAGGATTGCCTACTTCCAAGCAGGGCTTGTCCAAGGGTAAGGCGACCCAAGCCCTTGCTTTAG

Protein Sequence

>Glyur001024s00028098.1
MAVVPFNVVLSYLVMLLYLCFAIADHSEQNPEKISLLSFKEGLQNAHVLASWHPATPHCDWVGVTCQLGRVTSLSLPSLYLRGKLSLSLSSLSSLTVLNLEDNQFSGEIPGELCGLVQLQTLRLGSNSFAGKVPPELGHLTELRTLDLSGNALAGEIPESFGNLTRLQFLDLSNNFLSGSLPITLFTGAVSLISVDISNNTFSGELPPEIGNWKNLTALYVGINKLSGTLPKEIGELSKLEILYSPSCLIEGPLPEEMAKLKSLTKLDLSYNPLRCSIPKFIGELQNLKILDLVFAQLNGSVPAELGNCTNLRSVMLSFNSLSGSLPEELSQLPIITFSAEKNQLHGPLPSWLGKWSNVDSLLLSANRFSGVIPPQLGNCSVMEHLSLSSNLLTGPIPEELCNAASLLEIDLDDNFLSGTIEKEFVKCKNLTQLVLMNNQIVGPIPEYLSELPLMVLDLDSNNFSGRIPSSLWNLPTLMEFSAANNHLEGSLPVEIGNAVILERLVLSNNRLIGTIPKEIGGLPSLSVINLNGNMLEGSIPDELGDCISLTTLDLGNNQLNGSIPEKLVELSQLQCLVLSHNNLSGSIPAKESSYFRQLTIPDLSFVQHLGVFDLSHNRLSGTIPDELGSCVVVVDLLLSNNMLSGNIPRSLSRLTNLTTLDLSGNFLSGSIPQELGDAVKLQGLYLGQNQLSGSIPGSFGKLSNLVKLNLTGNKLAGPIPTSVGNMKELTHLDLSSNELSGELPSSLIETMNLSDNCFSGNLPRSLGNLSYLTNLDLHRNMLTGEIPLDLGNLMQLEYFDVSGNQLSGKIPEKLCSLVNLNYLDLSQNRLEGPIPRSGICQNLSRVRFVGNRNLCGQMLGTDCQDKVIGRSALFNAWRLAGIAITVILITVSIAFVLHRWITKRQDDPEDLEERKLNSYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDIIEATDNFSKTNIIGDGGFGTVYKATLPNGRTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVALLGYCSIGEEKLLVYEYMVNGSLDLWLRNRTGGLEILGWNKRYKIATGAARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHVTTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVSQKIKKGQAVDVLDPTVLDADSKQMMLQMLQIACVCLSDNPANRPTMLQEDCLLPSRACPRVRRPKPLL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01024	486	4792	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001024s00028098.1	PF08263.7	LRRNT_2	30	66	1.40E-08
Glyur001024s00028098.1	PF13516.1	LRR_6	92	114	0.31
Glyur001024s00028098.1	PF13855.1	LRR_8	142	200	8.90E-09
Glyur001024s00028098.1	PF00560.28	LRR_1	263	281	0.24
Glyur001024s00028098.1	PF13516.1	LRR_6	428	450	1.7
Glyur001024s00028098.1	PF00560.28	LRR_1	454	475	0.93
Glyur001024s00028098.1	PF13855.1	LRR_8	502	560	2.10E-07
Glyur001024s00028098.1	PF00560.28	LRR_1	612	631	0.66
Glyur001024s00028098.1	PF00560.28	LRR_1	657	676	0.041
Glyur001024s00028098.1	PF13855.1	LRR_8	681	740	6.20E-10
Glyur001024s00028098.1	PF00560.28	LRR_1	773	794	1
Glyur001024s00028098.1	PF00560.28	LRR_1	796	818	0.27
Glyur001024s00028098.1	PF00560.28	LRR_1	820	841	0.39
Glyur001024s00028098.1	PF07714.12	Pkinase_Tyr	966	1229	3.80E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.384
SRR1783600	control	0.395
SRR1783602	moderate drought stress	0.223
SRR1811619	moderate drought stress	0.242

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.101
DRR006524	Root Summer glycyrrhizin low producing strain	0.118
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.289
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.287

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.805
SRR2868004	Drought Stress (root)	0.961
SRR2967015	Control (root)	0.709

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.135
SRR9715740	Leaf	0.115
SRR9715741	Leaf	0.052
SRR9715739	Root	0.647
SRR9715742	Root	0.725
SRR9715743	Root	0.816

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.479
SRR8749028	MeJA induced 9h	0.892
SRR8749029	MeJA induced 9h	0.498
SRR8749030	Uninduced	0.008
SRR8749031	Uninduced	0.031
SRR8749032	Uninduced	0.144

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.786
SRR8400027	Control - Root	0.619