Gene detail

Gene detail information of Glyur001023s00038985

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30220.1	1.00E-115	inositol transporter 2
NR	XP_003595539.1	0	Carbohydrate transporter/sugar porter [Medicago truncatula]
COG	YP_001425064.1	1.00E-26	D-xylose-proton symporter [Coxiella burnetii Dugway 5J108-111]
Swissprot	tr\|Q9C757\|INT2_ARATH	3.00E-150	Probable inositol transporter 2
trEMBL	tr\|G7IGM5\|G7IGM5_MEDTR	0	Inositol transporter 4 {ECO:0000313\|EMBL:AES65790.1}

Sequence

Transcript Sequence

>Glyur001023s00038985.1
CATCACTTCTCACTATTTTCTAGCAAAAAGACCACTTAAAACATTTTTCTCGAGCTCTCTAGTCTCTTCTACGTTTTATGGGCTTGTGTGTGTGTGTGTGGTTGTAGATAGATAAAAGAACACACAACAAGAATCATGGAAGGAGGAGTGCCTGAAGCTGATGTCTCTGCCTTCAGAGAATGTTTGTCTCTGTCATGGAAGAATCCTTATGTTCTTCGCCTTGCTTTCTCTGCTGGAATTGGTGGCTTTCTCTTTGGCTATGACACTGGAGTCATATCTGGGGCTCTTTTGTATATAAGAGATGATTTCAAGGCTGTGGATAGAAAAACTTGGCTCCAGGAAGCCATAGTGAGTACGGCACTTGCTGGAGCAATCATAGGAGCCTCAGTTGGTGGGTGGATTAACGATCGATTTGGAAGGAAAAAAGCAATCATTATTGCAGACACCCTATTCTTTATTGGGTCANTTGTGATGGCTACTGCAATCAATCCATCTATTCTCATTGTGGGTNGAGTCTTTGTTGGTCTTGGTGTTGGAATGGCCTCAATGGCATCCCCTTTGTACATCTCAGAAGCATCCCCAACCAGAGTTCGAGGTGCACTTGTTAGTCTCAATGGATTTCTCATCACTGGAGGACAATTCCTTTCCTACGTCATCAACTTGGCCTTCACAAATACACCAGGAACATGGAGGTGGATGTTAGGAGTTGCAGCAGTACCAGCTTTAACACAAATCATACTGATGATTATGCTCCCAGAATCACCTCGTTGGCTGTATCGAAAGATGAAATAAATGCTTTGAAGGAATCAGTAGAAATGGAAATCAAGGAAGCTTCAGGTTCAGATAAGGTTAGCATAGTGAAGCTCTTGAAAACTAAAACTGTGAGAAGAGGACTATATGCAGGAATGGGTCTCCAAATCTTCCAGCAGTTTGTGGGTATCAACACTGTCATGTACTACAGCCCCTCCATTGTTCAGTTAGCTGGTTTTGCATCCAATAGGGTGGCACTGCTTCTATCACTTGTCATTGCTGGGCTAAATGCATTTGTCTCCCTTGTTGTTTTGACTGTTGTGTTCCATCAGACTACAACTCACTCTCCCATGGTTAGCTCAATTGAAACCTCTCACTTCAACAACACCTGCCCTGATTATAGGACTGCTTTGAATCCTGGTGAATGGGATTGCATGAAATGCCTCAAGTCTTCTCCTGAGTGTGGCTTTTGTGCTTCCAAAGCTAACAAGCTTTTACCTGGGGCATGCTTGATCTCCAATGACACAACCGAAGATCAGTGTCAAAAAGAGCAGCACAGGGAATGGTATACCAGGGGTTGTCCTAGCCAATATGGATGGCTTGCACTAATTGGCCTTGGACTATACATCCTATTCTTCTCACCAGGGATGGGAACTGTTCCATGGGTAGTCAACTCTGAGATCTACCCTCTAAGATACAGAGGGATCTGTGGAGGAATGGCATCTACCTCCAACTGGGTCTCAAATCTCATTGTTGCACAGTCCTTCCTGTCCTTGACAGATGCTATTGGGACTTCATTCACATTCATGATATTCATATTCATCACTATTGCAGCCATCATCTTTGTCATCATTTTTGTACCAGAAACCAAGGGGCTTCCAATTGAGGAGGTAGAGAACATGCTGGAAAGCAGAACTCTCAACTTCAAGTTTTGGCAGAGAAGTTCTGACTCTGGTCAAGTACTGAAACAGAAGACTATGGCACTTTGAGTGAATGAGTTGTATTGTATCATGGCATTGATGTATAAGTAGGGAACTATGAGATTGGACAATAGTATTGATAGAGTAAGATGTCGCATGCTAGATTAGTATTCTAGATTTATTGCTTTATCTTATGTAAAATTTTTAAAAAGTTGAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01023	16925	31516	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001023s00038985.1	PF00083.19	Sugar_tr	31	129	5.90E-15
Glyur001023s00038985.1	PF00083.19	Sugar_tr	219	322	7.70E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.074
SRR1783600	control	2.125
SRR1783602	moderate drought stress	2.164
SRR1811619	moderate drought stress	2.135

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.235
DRR006520	Root Summer glycyrrhizin high producing strain	9.356
DRR006521	Root Winter glycyrrhizin high producing strain	74.984
DRR006522	Root Winter glycyrrhizin high producing strain	73.766
DRR006523	Root Summer glycyrrhizin low producing strain	10.922
DRR006524	Root Summer glycyrrhizin low producing strain	10.691
DRR006525	Leaf Summer glycyrrhizin high producing strain	45.904
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.113

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.885
SRR2868004	Drought Stress (root)	7.344
SRR2967015	Control (root)	4.610

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	60.413
SRR9715740	Leaf	104.500
SRR9715741	Leaf	77.182
SRR9715739	Root	0.209
SRR9715742	Root	10.256
SRR9715743	Root	8.178

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.075
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.030

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.072
SRR8400027	Control - Root	1.607