Gene detail

Gene detail information of Glyur001022s00033099

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34750.1	1.00E-111	Protein phosphatase 2C family protein
NR	XP_003615115.1	1.51E-179	hypothetical protein MTR_5g063940 [Medicago truncatula]
COG	YP_003709340.1	8.00E-26	serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|Q9S9Z7\|P2C10_ARATH	2.00E-152	Probable protein phosphatase 2C 10
trEMBL	tr\|A2Q6E4\|A2Q6E4_MEDTR	6.00E-180	Serine/threonine phosphatase family, 2C domain protein {ECO:0000313\|EMBL:AES98073.1}

Sequence

Transcript Sequence

>Glyur001022s00033099.1
ATGAACTATCCAACCAAGGAAGACCAAGTTGAATCATTCCTTAATCCTGATTGGACCGGTAAGTTCAGGATTCTGGTCAAGGTCTTTGNATTTTGTGAGCTTGTATCTTCACGTTCTTCATCCAGCACCGGTAAGGGGAAAAATCATGGAGGGTCAGTAAAGTATGGTTTCACCCTAGTGAAAGGGAGAGCTAATCATCCAATGGAGGATTACCATGTTGCCAAGTTCGTACAGTTACAGGGAAAAGAATTAGGTTTGTTTGCTATTTATGATGGCCACCTGGGAGATCGTGTGCCTTCCTACTTGCAGAAACATTTATTTTCCAACATTTTAAAGGAGGAAGAATTTTGGGATGACCCTGCTGCATGTATATCAAAAGCATATCTGAACACAGACCAGGCAATTCTTTCACATAGTTCTGATTTGGGGCATGGTGGATCAACAGCTGTAACTGCTATATTAATCAATGGTCAAAAGTTATGGATAGCTAATGTAGGAGATTCACGAGCAGTTCTTTCAAGAAAAGGTCAAGCAGTGCAATTGACTACAGATCATGAGCCCAACACAGAAAGAGGCCTCATTGAGAATAAAGGTGGTTTTGTCTCCAACATGCCAGGTGATGTCCCTAGAGTAAATGGGCAACTGGCGGTTTCTCGCGCATTTGGAGACAAGAGCCTCAAGTCACATTTGCGATCGGACCCCGATGTACAGAGTACTGATGTAGATGTTGATATTGACATGTTAATCCTTGCAAGTGATGGACTTTGGAAGGTAATGCCTAATCAAGAGGCAGTGGATATTGCTAGAAGNATGAGAGACCCACTGAAAGCAGCTAAGCAATTAACAGCTGAAGCATTAAAAAGAGACAGTAAAGATGATATATCTTGTGTTGTGGTTAGATTTAGGTGTTGATTGATGATATCTTTTATACCACCAATAAGGGTACATCTCTGCATGGCATACCAATTTATGGACTACAACAACAAACATCGTATACTACATATACTTGGTTGGGTTAGGCTCTGACTGAATTCATTTAAGGTAATTTGCCAAAAGAAAAAAGAAAGGAAAAGGGTATGTCAACCTTTGAAATTGCTTTACAGGTTAGATTTTTGTCGTTTGAGATTGTTTGATTTCTTTATTTCAAGTGTGAATATAAGGAACCTGCTGTCTATTGTGTCAATTTATTCTGCATAAGAGAAAAAGGCAGCTATATGTAGATGGAGAATATGCATGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01022	85884	89510	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001022s00033099.1	PF00481.16	PP2C	63	294	1.60E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.609
SRR1783600	control	11.535
SRR1783602	moderate drought stress	10.705
SRR1811619	moderate drought stress	10.966

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.945
DRR006520	Root Summer glycyrrhizin high producing strain	9.973
DRR006521	Root Winter glycyrrhizin high producing strain	17.651
DRR006522	Root Winter glycyrrhizin high producing strain	16.943
DRR006523	Root Summer glycyrrhizin low producing strain	19.579
DRR006524	Root Summer glycyrrhizin low producing strain	19.942
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.937
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.952

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.664
SRR2868004	Drought Stress (root)	48.117
SRR2967015	Control (root)	42.941

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.450
SRR9715740	Leaf	44.730
SRR9715741	Leaf	68.986
SRR9715739	Root	2.566
SRR9715742	Root	10.098
SRR9715743	Root	8.063

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.483
SRR8749028	MeJA induced 9h	13.304
SRR8749029	MeJA induced 9h	12.200
SRR8749030	Uninduced	34.672
SRR8749031	Uninduced	66.150
SRR8749032	Uninduced	21.438

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.910
SRR8400027	Control - Root	23.431