Gene detail

Gene detail information of Glyur001022s00033090

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78230.1	1.00E-112	Outer arm dynein light chain 1 protein
NR	XP_007136258.1	0	hypothetical protein PHAVU_009G031700g [Phaseolus vulgaris]
COG	YP_001254468.1	1.00E-08	leucine-rich repeat-containing protein [Clostridium botulinum A str. ATCC 3502]
Swissprot	tr\|F4IIU4\|AIR9_ARATH	7.00E-08	187-kDa microtubule-associated protein AIR9
trEMBL	tr\|V7AUJ0\|V7AUJ0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW08253.1}

Sequence

Transcript Sequence

>Glyur001022s00033090.1
TTTCACAATTCATCCACTCTACATTACATCTATATAATGTTCCTTTAAAGCATTGATTAGCATAACTTATTAGGCTTAAGTTGTTAGAACAATGCATGCATGTTGGTTTCTTCTATATATTCTCGATTCTCTCTTTCGGATTCCAAGCAAATATATAACAATTAACAACCTCTGGCTCTGATACANGACCACAACCTTAAACTCTCCAATTTCACTTGTTTCTCTCTCTCTCTCTCACACACACTGCACTTTTGTTCCCTTCATCACACACCCCAATTTGCTTTGTAAGCCGGCACAGTTCCGTTTAGGTTCACCTTTTTCTCCATCAATGTTCGCACAATTCACGCCGTGATTTGCGCGGAGCAGACAGTAAGTCTGCGTTAGAATTACGAGGCATTTTGGGTCTTATTATTTCTGGAGACAAATATTGGTGGAGCTTTGAGAACTGAGAAGTAGCAAGAGTTGCTGCTGCTGCATATACAACAACTCTGGCCAATTTTCTAGAGATAGCTACACCAACCGGAACAGGCTTTGGTCTTTTGTTTTCTGGTTTCCGGTTTTGTTCAGACCGGGTTCGATCTCTTGTTCTGTGCCTTCCCACTGATTATGGCTAACATCTNGATTCAATTTGATATGTAGCTGATATAGTAGAGATGTAAGTGGCAATAGGAATTGCAAAGGAATCAAAAAGTGGCAAAAGAAGATTTTTAATTGAAAGGGGTTTGGAACAGGTTTCTTCTTCTTCTGGGATGGCCTTGTTTAGGTGTTTCTCTGTTTTGTCTCAAAGGAAGGTGAAAAACAAGGGGGATGGAAAATCTTCAAAAAGGGATGTTAGTGCTCTACATGCCAAACTTCAATATCCTAGAGTATCATCAGAGACAGATGACTTGGAGCCAAGCACCTTTGATGTTAAAGTACCACATGGTATTATCCAGGAAAACTCAAGGTGCAATGTGAGGGTTATGAGTCTTGAGAGCCCTGTGAAGGGTGAAGTTGAACAAGCTTATGAAGGGGAAGATGAGTATGAAGATTCATCCTTGATCAAGAGGGAACTCTCAGATTTTGATCTCCAACAAGGCCATCAAGTTGTTGCAAGCAAAGAAGGGTGTGATCCAACAGATAAAGAGATAAAGTCTCCCATTTCATATGGAAACCAAGACACCAATGACTTGGAAGAGAAAATCGACGTGTACAGCCAAAAGAGTGTTGATATAATNGAAGATGGACATGTCAGTGATCCTGGGATTGGCAAGGCTGATTTCTGGGCTTCTCCGAAGCTCAAGCGATCCTGCTCCAACCTTGAGAATAGGGATGTGCTTATGCAGGTAACTAAATACTTGCCTCCTTCAAAGTCACAGTCTTTTGAGGACTTTGAGGAATTAGCAGCAAATCCAATGGTTAATCTTGAGAGGTCTAGGTCTTTGATGAGTCACTGCAGTGCTGATAGAGTGATGTTGAAAAGGCATTCTTCAAGTCAAGTACTCNCTTCTGGGAGTAAAAAATTGTGGTGGAAGTTGTTCCTCTGGAGCCANAGGAATATACACANAACATTCTCTAGGAAATCAAAACTAGTTCCTGGTATTGCTTCTTTAAGTGGTCAATNTGGGTACAATTCAGACACCCATGAACCAAGGCAAGGCAAGGGGTTGAGACATGCGGAATCGTCCGAGTCAATTGCCATGGAGTCCTTCAACAAAATCTGCAACGGTAATAAAAATATCGATGATCAAAGGCGGAGCAGATTTCAAAATGGAAATACCGGTATTTGGCCCNAGAACCAATGGTTTGCTTTCTCAANAGAATCATCTTCCTTTGCCAGAGTGGATGCATGGGTGAAAGATCTTGAAATTCAACAACCACTTCCGGAGGATGATTTCGATGATGACAATGNCGGAAGCATTGCCTTCCCACCTTCTCCTGATGCTGGTAAATCATTGAGAAGATGCACATCTCTGTTGGCTCATCCANATGCCAATTTTTCAAAGGAGATTTTGAATGCCAATAGTTTGGTCCTGTCTCTAAATCCAGCTTCATCTGTTGCTCACATATNCAGTTTTGGTATAAACACCATCCCGGTTATTTCGCACTTTTCCAATCTCCGCTCTGTCAATTTGTCCAACAATTTCATAGTTAACATCTCGCNGGGATGTCTACCAAAGGGTATTCAAACACTTAATTTGTCAAGAAACAGGATCGGCACCATTGAGGGCCTCAGAGAAATGACNCGGTTGCGGGTACTTGACCTAAGTTACAACCACATCTCAAGAATCAGACAAGGATTGTCAAACTGTACACTGATCAAAGAACTATATCTTGCCGGGAACAAGATAAGCAATGTTGATGGGCTGCACAGGCTATTTAAGCTAACAATTCTGGACTTGAGCTTCAACAAGATCACAACAACAAAAGCATTAGGCCAACTAGTGGCTAACTACAACTCACTCCAGGCCCTTAATCTACTCGGAAATCCTATTCAAATAAACATCAGTGATGAACAACTAAACAAAGAAGTCTGTGGTCTCCTCCCAAAGTTGGTGTACCTGAACAAACAACCCCTCAAGGCTAAGAGGGCACGCGAAATTCTCACTGATAGTGTTGCCAAAGCTGCACTAGGGAACAACAACCGGAGCTACGGAAGAAGATCACTAAAGAGAGCCAACCAAGGAGGATCAAGTTCCAGCAGAGGGCATAGAAGCAGTGCAGGCGTGGCACAGAAAAGCAGGAGCAAGATAAGGAGGTGAAAAAAGTGGATATTTTTTTCCTGCCTGTAAAAGGAACAACTCATTAGAAAACTGTTCAATTTGGCATCTACAATGTTTCATTTGTTTATACCATAGAGGAAACTGTGCATTATGCGTTGATTCTGTCTCTTGGTTTGTTAATTGTTGAAGTGATGGGGTCTTCATTGTCTCCAACTTTTGTGTGTGGAACTTGATATGATCATCATCTGGGTTTCACAAATTCTGTGAACATTATGCAAATAGATTTTGCCTGTGTAAGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01022	2356	6016	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001022s00033090.1	PF13855.1	LRR_8	472	527	2.40E-09
Glyur001022s00033090.1	PF13516.1	LRR_6	538	552	1.1

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.704
SRR1783600	control	11.862
SRR1783602	moderate drought stress	5.143
SRR1811619	moderate drought stress	4.972

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.933
DRR006520	Root Summer glycyrrhizin high producing strain	16.887
DRR006521	Root Winter glycyrrhizin high producing strain	42.529
DRR006522	Root Winter glycyrrhizin high producing strain	41.302
DRR006523	Root Summer glycyrrhizin low producing strain	18.557
DRR006524	Root Summer glycyrrhizin low producing strain	18.418
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.805
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.708

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.640
SRR2868004	Drought Stress (root)	14.507
SRR2967015	Control (root)	17.310

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.263
SRR9715740	Leaf	1.479
SRR9715741	Leaf	1.173
SRR9715739	Root	0.659
SRR9715742	Root	3.291
SRR9715743	Root	2.343

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.414
SRR8749028	MeJA induced 9h	45.839
SRR8749029	MeJA induced 9h	24.826
SRR8749030	Uninduced	189.783
SRR8749031	Uninduced	184.088
SRR8749032	Uninduced	196.497

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.077
SRR8400027	Control - Root	24.370