Gene detail

Gene detail information of Glyur001021s00028019

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G25520.1	8.00E-113	ribosomal protein L5
NR	XP_004500722.1	2.50E-176	PREDICTED: 60S ribosomal protein L5-like [Cicer arietinum]
COG	NP_559765.1	1.00E-29	50S ribosomal protein L18 [Pyrobaculum aerophilum str. IM2]
Swissprot	tr\|Q6UNT2\|RL5_CUCSA	5.00E-166	60S ribosomal protein L5
trEMBL	tr\|V7ASM3\|V7ASM3_PHAVU	3.00E-176	Uncharacterized protein {ECO:0000313\|EMBL:ESW07191.1}

Sequence

Transcript Sequence

>Glyur001021s00028019.1
ATGGCGTTGTTCTTGTTGCCGGGGAGGGAGGCTTGGCGCGACAGAGAGAGACTCGAGTTGCCTGGGAAGGACATGTTTACGAGAGTCGATAGAAAAAAGGGGATAAGGCCCATAGACGAAGCCCAAAGGACATCGTTTCTTTCTCCCGTCTCCGCCCCAGCCGCTGTTCCCGGTGCGGGCAATCACTCTCATTCATTCGGAATGGCATTTGTCAAGGCTCAGAAATCTAAGGCCTACTTCAAGAGATATCAAGTCAAATTTAAGAGAAGAAGAGATGGAAAGACTGATTACCGGGCCAGGATTCGTCTGATTAACCAGGACAAAAACAAATATAACACGCCAAAATATCGATTTGTCGTTCGATTTACAAATAAGGACATCACTGCTCAAATAACATCTGCCAGCATTGCTGGTGATATAGTCCTTGCTGCAGCATATGCCCATGAGCTCCCTCGCTATGGTCTCGAAGTAGGCCTTACAAACTATGCTGCAGCCTATTGCACTGGACTCCTCTTGGCTCGTCGAGCTACTGGAGAGGATTATTCAGTTGAACCTGCTGACACCAGGAGGCCATTCCGTGCTCTCCTTGANGTTGGTCTTGTCAAGACCACAACTGGACATCGTGTGTTTGGTGCACTCAAGGGAGCTTTAGATGGGGGNCTGGATATTCCTCACAGTGAGAAAAGGTTCGCTGGTTTTAACAAGGACAAGAAAGAGCTTGATGCTGAGGTTCACCGAAAATATATATTTGGTGGACATATTGGTGCCTATATGAAGGCACGTGCAAAGATTACTTTGATGGAAGATGAACCCGAGAAATACCAATCACACTTCAGTGAATATATCAAGCGTGGGATAGAGGCCGATGGACTTGAGGAGCTATNCAAAAAGGTTCATGCTGCCATTCGTGCAGACCCTACATTGAAGAAGTCTGAGAAGCAGCAGCCAAAGGAACNCAAGAGATACAACCTNAAGAAGCTCACTTATGAGGAGAGAAAGGCAAAGTTGATTGCNCGCTTGCAGGCTCTTAATTCTGCAGCTGGAGTTCAAGATGACGAAGATGATGATGATGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01021	68305	71406	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function

GO:0003735 structural constituent of ribosome

GO:0008097 5S rRNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001021s00028019.1	PF00861.17	Ribosomal_L18p	93	223	1.90E-41
Glyur001021s00028019.1	PF14204.1	Ribosomal_L18_c	242	336	1.90E-31
Glyur001021s00028019.2	PF00861.17	Ribosomal_L18p	93	234	3.90E-27
Glyur001021s00028019.2	PF14204.1	Ribosomal_L18_c	253	347	2.10E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	120.192
SRR1783600	control	121.106
SRR1783602	moderate drought stress	67.190
SRR1811619	moderate drought stress	66.576

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	122.358
DRR006520	Root Summer glycyrrhizin high producing strain	120.280
DRR006521	Root Winter glycyrrhizin high producing strain	55.382
DRR006522	Root Winter glycyrrhizin high producing strain	56.584
DRR006523	Root Summer glycyrrhizin low producing strain	85.412
DRR006524	Root Summer glycyrrhizin low producing strain	86.548
DRR006525	Leaf Summer glycyrrhizin high producing strain	54.575
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.888

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	243.988
SRR2868004	Drought Stress (root)	146.858
SRR2967015	Control (root)	129.234

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	76.197
SRR9715740	Leaf	69.080
SRR9715741	Leaf	63.894
SRR9715739	Root	59.322
SRR9715742	Root	75.580
SRR9715743	Root	70.775

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	318.873
SRR8749028	MeJA induced 9h	133.214
SRR8749029	MeJA induced 9h	201.529
SRR8749030	Uninduced	19.128
SRR8749031	Uninduced	14.390
SRR8749032	Uninduced	20.841

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	111.817
SRR8400027	Control - Root	96.216