Gene detail

Gene detail information of Glyur001021s00028015

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35100.2	1.00E-146	plasma membrane intrinsic protein 3
NR	BAD90701.1	0	plasma membrane intrinsic protein 2;5 [Mimosa pudica]
COG	YP_006991169.2	3.00E-30	MIP channel s family protein [Carnobacterium maltaromaticum LMA28]
Swissprot	tr\|P93004\|PIP27_ARATH	0	Aquaporin PIP2-7, N-terminally processed
trEMBL	tr\|Q5DVT5\|Q5DVT5_MIMPU	0	Plasma membrane intrinsic protein 2;5 {ECO:0000313\|EMBL:BAD90701.1}

Sequence

Transcript Sequence

>Glyur001021s00028015.1
GTTGCCCTTGTCTTAGCCACACTCCACTCCACCACTGTTCCTTTGCCCTTCTCCCCTTCCATATGATATGATAAAAGGACCCTCTCACTCACACACACTACAGTCTCGTCTTACTTACTCACACACCCCCAACCACAACCAACCACTGCGCTGCGCGCAATTCAATTCAGTCACAGAGAGAGAGAGAGAGAGAAAAGAAAGAGAGAGATGTCGAAGGAAGCGAGAGAGGAAGGGCACCACCACGGGAAAGACTATGTAGACCCACCGCCGGCACCCCTCATCGACATGGCGGAGATCAAGCTGTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCATCGCCACCCTCCTCTTCCTCTACGTCACCGTCGCCACCGTCATCGGTCACAAGAAACAAACCGGACCCTGCGACGGTGTCGGCCTTCTCGGCATCGCCTGGTCCTTCGGTGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGTATCTCCGGTGGCCACATAAACCCTGCGGTTACGTTTGGGCTGTTCTTGGCCCGTAAGGTGTCTCTGATTCGGGCCGTATTGTACATGGTGGCACAGTGCTTGGGTGCCATCTGTGGTGTTGGGTTGGTGAAGGCTTTCATGAAGCACTCCTACAACTCCCTCGGCGGCGGTGCCAACTCTGTCAATACCGGCTACAGCAAAGGCACTGCTCTTGGCGCTGAGATCATCGGCACATTCGTGCTCGTCTACACCGTTTTCTCCGCCACTGACCCCAAGAGAAGCGCCCGCGACTCCCATGTCCCCGTATTGGCTCCATTGCCCATTGGGTTTGCTGTTTTCATGGTTCACCTGGCTACCATACCAATCACCGGTACCGGCATTAACCCCGCCAGGAGCTTCGGTGCTGCCGTCATCTTCAACAACGGCAAAGTCTGGGATGACCATTGGATCTTCTGGGTTGGGCCGTTCGTGGGAGCGCTGGCGGCGGCTGCATACCACCAGTACATACTGAGGGCGGCGGCTATCAAGGCGTTGGGCTCGTTCCGAAGCAACCCCACCAACTAATTCAACAACAGCTAGCGACAGAGATCCATCCATAGGATACATTACAACTCTTGTGTTTGCATTATTCATCATTTATTCGCTTCGCTTCGTGTGTGTGTGTGTGTATCGGTATGATAATTAAAATTAAAATGATGCAGACGATGATCGTGACCCCTCCATTTATTTTGTATTTATTTATTTCTTTGGTTTGTTTGTATGATATGATACGATATGATATGATATGATATGATGCCCGTGGCTGATGACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01021	49935	51608	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001021s00028015.1	PF00230.15	MIP	30	258	5.30E-85

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	218.241
SRR1783600	control	225.728
SRR1783602	moderate drought stress	146.506
SRR1811619	moderate drought stress	147.871

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	225.727
DRR006520	Root Summer glycyrrhizin high producing strain	223.036
DRR006521	Root Winter glycyrrhizin high producing strain	1.419
DRR006522	Root Winter glycyrrhizin high producing strain	1.173
DRR006523	Root Summer glycyrrhizin low producing strain	99.960
DRR006524	Root Summer glycyrrhizin low producing strain	101.781
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.842
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.766

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	456.063
SRR2868004	Drought Stress (root)	230.297
SRR2967015	Control (root)	274.563

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	87.036
SRR9715740	Leaf	7.701
SRR9715741	Leaf	20.798
SRR9715739	Root	233.931
SRR9715742	Root	198.916
SRR9715743	Root	199.104

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	101.247
SRR8749028	MeJA induced 9h	31.648
SRR8749029	MeJA induced 9h	39.926
SRR8749030	Uninduced	2.724
SRR8749031	Uninduced	0.030
SRR8749032	Uninduced	2.472

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	494.939
SRR8400027	Control - Root	699.381