Gene detail

Gene detail information of Glyur001021s00028012

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35070.1	2.00E-41	SBP (S-ribonuclease binding protein) family protein
NR	KHN19994.1	5.82E-97	hypothetical protein glysoja_014572 [Glycine soja]
Swissprot	tr\|Q9LDD1\|BRG3_ARATH	9.00E-27	Probable BOI-related E3 ubiquitin-protein ligase 3
trEMBL	tr\|C6TKX9\|C6TKX9_SOYBN	8.00E-97	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU23569.1}

Sequence

Transcript Sequence

>Glyur001021s00028012.1
GCGACGGAGAGAGAAACTCTGCACTATCCCTGGGTCTCTCTTAACTTCCATTTCCAGCTTTTCAGTTACTATTTCCATGTACTATTCAAAATCTATCCATTAATTTATTTCCAACTCTTTTTTAATGCGTGATATTTATTTATTCTCCCCTACACTCCCAACTTCATAATACAACGCACTGCCACTGACACAACACACAAACAAACAACTCTCTGATTCTTGCTTATGACCCGCCGTGAGACCATCTAAGTCCTCTTCNATCATCCTTTTAAACGTTATTTATATATTCTATTCTGTATTCGGTGCAAGCAAATGTGGGTGANGGAGATTTGATTTGAGGAAACAGAGTAGTAGTTGGCTTTGGCTCTGAATTGCGATTCGATTTTGGATCTGGAGATGGCAATTGAGGCACATTTGTATCCCACTAANGCAGGGTTCCCATACTTTGTGCCACAGTTCCACAACGAGACTCAGATCAATCAAAACACGCTGGTTGTTGACCCCAGTCTTCTTCTTCTCTCTGATTCTAATGCATACGGCTACACCCCCGCCGCAAATAAGCATAACAATCAACCCATGACGACGCCAATTTCTCAGAGCCTGGCTTTTGAGTTTGACAAACAGAGGGACGAGGTCGATCAGTTCATCAGATCACAGANTGAGAAATTGAGAATTGTGATGCAAGAGCAGAGAAGGCAACAAGTGGCGGCCTTNCTGAAGAAGGTGGAATCGGATGTTTGTTATGTGCTGAGCCAAAAGGATGAACAAATAGCAGAGGCAGCNAAGAAAAGGGTGGAGCTGGAAGAATTTTTGACGAGGCTAGAAGCAGAGAACCAATCGTGGAGGAGAGTTGCCCAGGAAAACGAGGCCATGGTATTGTCGCTCCACAACACCTTGGAACAGGTCAAAGAGAGAGCCTCGTGTTGTTTTAACAACAATGGAGTGGCAACAGAGGATGCAGGGTCATGTTGTGACGAGAACATGGGAACAGAGGAAGAAGGAACAGGGGAAAACAGAGCCTGTCGTGGTGGGGCAGGAGGAGGGGGTGAACAAATTCCAAGACAGACTATTGTTTGCAAATGCTGTCAGTCACGGAACTCGTGCTTCATGTTCCTTCCTTGCAGGCACCTCTGTTCATGCAATGCTTGCGAGCCTTTTCTCAAGGCATGCCCTGTTTGCAGAATGCCAAAGAAGTCTAGTATAGAGACTCTGATTTTCTAGGCTGAGTAAATATTAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01021	31306	32644	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001021s00028012.1	PF13920.1	zf-C3HC4_3	226	267	1.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.606
SRR1783600	control	1.669
SRR1783602	moderate drought stress	0.659
SRR1811619	moderate drought stress	0.698

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.810
DRR006520	Root Summer glycyrrhizin high producing strain	1.847
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	9.916
DRR006524	Root Summer glycyrrhizin low producing strain	9.812
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.224
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.225

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.290
SRR2868004	Drought Stress (root)	2.444
SRR2967015	Control (root)	3.668

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.256
SRR9715740	Leaf	0.141
SRR9715741	Leaf	0.315
SRR9715739	Root	5.519
SRR9715742	Root	1.341
SRR9715743	Root	2.550

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	184.086
SRR8749028	MeJA induced 9h	68.188
SRR8749029	MeJA induced 9h	60.049
SRR8749030	Uninduced	4.627
SRR8749031	Uninduced	1.826
SRR8749032	Uninduced	4.098

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.722
SRR8400027	Control - Root	1.366