Gene detail

Gene detail information of Glyur001021s00028011

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38580.1	4.00E-57	farnesylated protein 6
NR	XP_007137345.1	1.57E-99	hypothetical protein PHAVU_009G119300g [Phaseolus vulgaris]
COG	YP_003401715.1	9.00E-06	heavy metal transport/detoxification protein [Haloterrigena turkmenica DSM 5511]
Swissprot	tr\|Q9SZN7\|HIP26_ARATH	1.00E-83	Heavy metal-associated isoprenylated plant protein 26 (Precursor)
trEMBL	tr\|T2DMZ8\|T2DMZ8_PHAVU	6.00E-100	Uncharacterized protein {ECO:0000313\|EMBL:ESW09339.1}

Sequence

Transcript Sequence

>Glyur001021s00028011.1
GTGGAATTTTATCGATTTTTATTGACAATTTGCTCGCAACGAAAAAGAGATAAAAATAAAAGCTTTTTTCACCCAAAAACGAAACGTTTCGCCTTGGGCGCTGGTGCATACATGACTTTATATCGATTCTGTAACCGACATCGTCCACCAGAGCCGGGACACGTGGCANCACATGTTTCATCCTCGTGATATCAAGGACGTCTCAGATTTGAAGTAACACCGTAGTGGGCGAGTGAATGAATCCCATGTGGTTGGTTGCTGGTGGACACTCTCTCTGCACTGCACTTGTGTGTGTGTGTGTGTGTGTGTTGCTTATAAAAGTGACCAAACCAAACAAGGTCCTTGTGTCCTGTACTTACCGTTTTCCTGCTTAGCTTATCATCATCATCATCAGAATCAGATATTGGAATCAAGTATCATCCTTGTACGAAATGGGTGCTCTGGATCATATTTCTGAGCTCTTTGACTGCTCCGGCGGCAGCTCCAGACTCAAAAGGCGCAGGCAATTGCAGACGGTGGAAGTGAAAGTGAAGATGGACTGCGAAGGGTGCGAGAGGAAGGTGAAGAAGGCGGTGGAGGGGATGAGAGGGGTGAACCAGGTGGAGGTGGAGCGCAAGGCCAGCAAGGTCACCGTCGTCGGCTACGTCGAACCCTCCAAGGTGGTGGCACGCATCGCTCACCGCACGGGGAAGAGGGCAGAGCTGTGGCCCTATGTCCCCTACGACGTCGTCGNCCACCCCTACGCCCCCGGCGTCTACGACAGGAAAGCCCCCTCCGGTTACGTCCGAAACGACGCCGACCCTCACTACTCCCAACTCCAACGCGCCAGCTCCACCGAGGTCCGCTACACCACCGCTTTCAGCGACGAGAACCCCACCGCCTGTGCCGTCATGTGATGTGACCGATACATGATTCCATTCCGTTCCGTTTCCCCTGTTTTCCCCCTTTTGAGTCTTTTCTTTCTTTTTCTTTTTTCTGTTGCAATTTGTAAAAGTAAAGTACATTACATTACATTACATTACTCAGTTGCTAACACCTGCCTACCTTGCTCAGGATTGAGTGCCTCTGTTTTGGCGTAGTTGTAGTTGCAGTTGCAGTTGCTATGTCAATGTGCTGCCAACGTTGAATTCGCCAAATTTGTAATGTTCATTGTAAATTATTCGAGTTTTTGAGAATCTGTGTTGATTNTAGGTTTTCTCGGNAGTCTGAGTAATCACTTACAGTTTTTGATTGATTTTCTATTCCCATCACATACAATTTTCAAATTTGTTTCCCTTCTCCTTATTTCATCTTCACTGGCAAATTAATTATTTCAAAACTTGTTTTTTGTTTTAATTTTTTTAATATGAATTGTGTATTTCAATTTTGGAATTTCGTGACTTGGGCTTTCCATAATTCATCTCGCGACGCTGTGCTGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01021	10538	12138	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030001 metal ion transport

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001021s00028011.1	PF00403.21	HMA	31	87	3.00E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	157.702
SRR1783600	control	164.173
SRR1783602	moderate drought stress	149.232
SRR1811619	moderate drought stress	149.650

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	219.080
DRR006520	Root Summer glycyrrhizin high producing strain	219.986
DRR006521	Root Winter glycyrrhizin high producing strain	184.574
DRR006522	Root Winter glycyrrhizin high producing strain	182.756
DRR006523	Root Summer glycyrrhizin low producing strain	214.907
DRR006524	Root Summer glycyrrhizin low producing strain	214.761
DRR006525	Leaf Summer glycyrrhizin high producing strain	135.866
DRR006526	Leaf Summer glycyrrhizin high producing strain	136.923

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.478
SRR2868004	Drought Stress (root)	44.921
SRR2967015	Control (root)	90.714

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	141.661
SRR9715740	Leaf	102.362
SRR9715741	Leaf	101.039
SRR9715739	Root	172.919
SRR9715742	Root	122.964
SRR9715743	Root	121.822

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.403
SRR8749028	MeJA induced 9h	12.650
SRR8749029	MeJA induced 9h	20.651
SRR8749030	Uninduced	4.147
SRR8749031	Uninduced	0.108
SRR8749032	Uninduced	0.406

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	96.476
SRR8400027	Control - Root	124.191