Gene detail information of Glyur001020s00038697 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52650.1 | 3.00E-07 | RNA binding Plectin/S10 domain-containing protein |
| NR | XP_011046026.1 | 6.48E-09 | PREDICTED: 40S ribosomal protein S10-1-like isoform X2 [Populus euphratica] |
| Swissprot | tr|Q9AYP4|RS10_ORYSJ | 1.00E-09 | 40S ribosomal protein S10 |
| trEMBL | tr|A9PHC9|A9PHC9_POPTR | 3.00E-09 | 40S ribosomal protein S10-1 {ECO:0000313|EMBL:ERP50187.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01020 | 24385 | 25286 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001020s00038697.1 | PF03501.10 | S10_plectin | 23 | 55 | 2.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.712 |
| SRR1783600 | control | 6.923 |
| SRR1783602 | moderate drought stress | 14.732 |
| SRR1811619 | moderate drought stress | 13.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.408 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.442 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.877 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.632 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.961 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.284 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.965 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.285 |
| SRR2868004 | Drought Stress (root) | 2.114 |
| SRR2967015 | Control (root) | 2.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.730 |
| SRR9715740 | Leaf | 0.831 |
| SRR9715741 | Leaf | 1.190 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.257 |
| SRR9715743 | Root | 0.216 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.403 |
| SRR8749028 | MeJA induced 9h | 2.262 |
| SRR8749029 | MeJA induced 9h | 0.836 |
| SRR8749030 | Uninduced | 0.564 |
| SRR8749031 | Uninduced | 0.204 |
| SRR8749032 | Uninduced | 0.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.401 |
| SRR8400027 | Control - Root | 4.240 |