Gene detail information of Glyur001020s00038693 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16050.1 | 2.00E-25 | Cysteine/Histidine-rich C1 domain family protein |
| NR | XP_006583724.1 | 2.92E-67 | PREDICTED: uncharacterized protein LOC102667953 [Glycine max] |
| trEMBL | tr|I1KKW3|I1KKW3_SOYBN | 1.00E-67 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G26560.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01020 | 3367 | 4110 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001020s00038693.1 | PF07649.7 | C1_3 | 26 | 55 | 1.40E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.308 |
| SRR1783600 | control | 7.508 |
| SRR1783602 | moderate drought stress | 0.101 |
| SRR1811619 | moderate drought stress | 0.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.165 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.151 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.148 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.146 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.056 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.362 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 39.632 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.501 |
| SRR2868004 | Drought Stress (root) | 5.648 |
| SRR2967015 | Control (root) | 6.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.605 |
| SRR9715740 | Leaf | 10.696 |
| SRR9715741 | Leaf | 13.954 |
| SRR9715739 | Root | 0.474 |
| SRR9715742 | Root | 1.383 |
| SRR9715743 | Root | 0.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.027 |
| SRR8749028 | MeJA induced 9h | 0.232 |
| SRR8749029 | MeJA induced 9h | 0.435 |
| SRR8749030 | Uninduced | 0.066 |
| SRR8749031 | Uninduced | 0.080 |
| SRR8749032 | Uninduced | 0.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.709 |
| SRR8400027 | Control - Root | 9.732 |