Gene detail

Gene detail information of Glyur001019s00033951

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08850.1	3.00E-172	Leucine-rich repeat receptor-like protein kinase family protein
NR	KHN32423.1	0	Putative LRR receptor-like serine/threonine-protein kinase [Glycine soja]
COG	YP_004775215.1	4.00E-48	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|K7LSB8\|K7LSB8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G00980.2}

Sequence

Transcript Sequence

>Glyur001019s00033951.1
ATGATCAGCCATAATCATACCTATCTTGCAATTCCAGCCNCTTTGCTGGTTTTGTTGGCTCTCTGTCAAGGCACTTCAGGGCTAACACAAGCTGAGGCCTTGCTCAAGTGGAAACAGAGTCTCCCTCACCAACCGATTCTGGATTCATGGGTGGTGACCAACTCNAGTGCAACAACTCAAAGNCCATGTTCATGGCGAGGTATCACTTGTGATTCTCAAGGCAGCGTGACTNNNATAAACTTGGCATACACTGGACTTGAAGGTACCCTCCAAAACTTGAACTTGTCAGTTTTTCCAAACCTCCTTCGTCTTGATCTCAAAACAAACAATCTTGTTGGCCCCATCCCAGAAAACATTGGGGTGCTTTCAAAACTCCAATACCTTGATCTTTCCACCAATTATCTAAATGGCACTCTGCCTCTTTCTATTGCCAACCTAACTCAGGTCTATGAGCTTGATGTTTCAAGAAATGACGTAACAGGGATATTAGACCCTCGCTTATTTCCTGATGGAACTGATCAGCCCAAAACTGGTCTAATTGGGATCAGGAATCTCCTCTTTCAGGATACCCTTTTGGGTGGCCAAATTCCAAATGAAATAGGAAACATAAAAAACTTGACTTTGCTAGCTCTGGATGGTAACAACTTCTATGGGTCTATTCCTCCATCTCTAGGAAACTGTACTCATTTAAGCATTCTTAGAGTGTCTAATAACAACCTTTCTGGTCCAATACCCCCAAGTATTGGCAAGTTAACNAATCTAACCGATNTGCGTTTTCTTACTAACNACTTAAATGGTACGGTGCCNCAAGAATTTGGAAACCTGTCTTCTTTGGTTGTGCTGCATCTTGCTGAGAACAATTTCATTGGTGAATTGCCACCACAAGTGTGCAAAGGTGGCAAGCTTGTCAATTTCAGTGCAGCCTACAATGGTTTCAGTGGCCCAGTTCCGGTGAGCCTTAGAGACTGCCCAACCTTGTATAGAGTTCGACTCGAATACAACCAGTTGAGAGGTTANGCAGATCAGGATTTTGGAGTGTATCCTAACCTTACTTACATGGACTTCAGCTATAATAGGGTGCAGGGTGAGCTCTCTTCTAAATGGGGTGCTTGCAAAAACTTGCAATCACTCAAAATGGCTGGGAATTCTGTGAGTGGCAATATTCCAAGTGAGATTTTTCATTTGGACCAACTTCAAGAGCTCGACCTATCCTNCAACCAACTATCNGGAGATATNCCCCNACAGATAGTAAATTCCTCAAACTTGTATACTTTAAATTTGGGTGGCAATAGACTTTCTGGTANGATACCAGTAGAAATTGGAAAANTTTCTAGTCTACGGTCTTTAGANTTGTCAATGAACNTGTTGTTGGGATCAATTCCAAATGAGATAGGGGACTTCTCCAACTTACAGAATTTAAATTTGAGTAACAATGGCTTGAATGGCACAATTCCCTACCAAATTGGNAATCTTGCATCTTTACAAGATTTTTTGGACTTGAGTTACAACTCACTTTCAGGGGAAATTCCTGCTGATATTGGTAAGCTTCCAAATTTGATAAGCTTGAACATCTCTCACAACAATNTATCTAGTTCTATCCCTAATTCCCTCAGTGGAATGTTGAGCTTGTCAGNCCTCAACCTCTCTTATAATCATTTGGAGGGCACTGTTCCTAAAGGTGGCATATTCAACTCTTCTCATCCACTGGATTTGAGCAACAACAACGAGTTATGTGGGAATGTCCGAGGTTTGCAACCTTGTAATGTCTCACACACTGAACCTGGTGGTGGAAGTAACAAACACAAGGTTGTGATCCCCATTGTTGCTTCTTTGGGAGGTGCCCTTTTACTTTCTTTGGTGTTAGTTGGGATTATTTTCTTCTACAATAAGAGAAAGTCTAGAGCTTCAAGACAAATATCTTCATTGAAGAGACCAAATCCATTTTCAATTTGGTACTTCAATGGCAGAGTTGTATATGGAGACATAATTGAAGCGACCAAGAACTTTGACAACCAGAATTGCATTGGGGAAGGAGCACTGGGAATAGTCTACAAAGCAATGATGCCAGGAGATCAAGTATTTGCTGTGAAGAAGTTAAAATGTGATGAAGACAACTTAGACACAGAGAGTATAAAAACCTTCCAGAGTGAGGTAGAAGCCATGTCAGAAACACGCCACCGAAACATTGTGAAACTTTACGGGTTTTGTTGTGAAGGGATGCACACATTTCTAATTTATGAGTATATGNANAGAGGGAGCTTAGCTGATATGCTGACAAATGACATGAAAGCATTAGAACTAGATTGGCACAAAAGGGTTGGTATTATCAAAGGTGTGGCAAGTGCTCTATCCTACATGCATCATGATTGTGCTCCACCTTTAATTCATAGGGACATATCAAGCAAGAATGTTTTATTATCATCCAATCTTGAAGCTCATGTCTCAGATTTTGGCACTGCAAGGTTTCTGAAGCCTGATTCGCCTATTTGGACATCATTTCAAGGCACATATGGCTATGCTGCTCCAGAGCTTGCTTACACAATGGCAGTGACTGAAAAATGTGATGTGTTCAGCTTCGGTGTTTTGGCATTTGAGGTTCTTACAGGAAAACACCCTGGCGATCTTGTTTCTTACATACAAACTTCCAGTGAACAAAAAATAGACTTCAAAGAGATTTTAGACAAGCGCCTCCCACCTCCCGCAAAGAAGAGTATCTTGAAGGAATTGGCATTGATTGCAAACTTGGCTCTTTCTTGTTTACAAACAAACCCTCAATCTCGACCAACCATGCGAAGCATAGCTCGGCTGCTTGAAATGGAGATTGCAGATAACTCGTGATTGAAGTGTACTTTACTATTTTGAGTATTTTCTCTTGCCCGGATTTGCAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01019	67918	71208	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001019s00033951.1	PF08263.7	LRRNT_2	29	71	1.80E-09
Glyur001019s00033951.1	PF00560.28	LRR_1	124	146	0.51
Glyur001019s00033951.1	PF00560.28	LRR_1	229	251	0.6
Glyur001019s00033951.1	PF13516.1	LRR_6	397	412	1.3
Glyur001019s00033951.1	PF00560.28	LRR_1	469	491	0.26
Glyur001019s00033951.1	PF13855.1	LRR_8	498	553	4.60E-07
Glyur001019s00033951.1	PF00069.20	Pkinase	671	934	5.90E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.692
SRR1783600	control	0.774
SRR1783602	moderate drought stress	0.750
SRR1811619	moderate drought stress	0.762

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.259
DRR006520	Root Summer glycyrrhizin high producing strain	0.260
DRR006521	Root Winter glycyrrhizin high producing strain	0.225
DRR006522	Root Winter glycyrrhizin high producing strain	0.226
DRR006523	Root Summer glycyrrhizin low producing strain	0.878
DRR006524	Root Summer glycyrrhizin low producing strain	0.783
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.257
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.257

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.247
SRR2868004	Drought Stress (root)	40.964
SRR2967015	Control (root)	43.289

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.999
SRR9715740	Leaf	2.868
SRR9715741	Leaf	11.224
SRR9715739	Root	1.301
SRR9715742	Root	3.023
SRR9715743	Root	3.312

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	53.901
SRR8749028	MeJA induced 9h	55.034
SRR8749029	MeJA induced 9h	38.651
SRR8749030	Uninduced	71.228
SRR8749031	Uninduced	78.147
SRR8749032	Uninduced	38.124

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.874
SRR8400027	Control - Root	7.360