Gene detail

Gene detail information of Glyur001018s00028947

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58430.1	6.00E-64	exocyst subunit exo70 family protein B1
NR	XP_003615928.1	5.47E-130	Exocyst complex component [Medicago truncatula]
Swissprot	tr\|Q9FGH9\|E70B1_ARATH	1.00E-69	Exocyst complex component EXO70B1
trEMBL	tr\|G7K5R1\|G7K5R1_MEDTR	2.00E-130	Exocyst subunit exo70 family protein {ECO:0000313\|EMBL:AES98886.1}

Sequence

Transcript Sequence

>Glyur001018s00028947.1
ACAATAACTAATCACATTAGTAATATCCTAGCAGGGTTCTCCTCTGCCGCTACTCGTTGTTTCAAAGAGGTTTGTCAAGGAACAACGTCTCAGCTCCTGAATTTTGCCGATGCAGTTGCCACTGGGAGCCCTTCAATGTGGCGTTTGTTAAAAATGGTCGCAATCTTTGAGACGTTGCATTATCTAATTCCGAAACTCCAATCACTGTTTCCNGATCCATTCGTGATTGAAGCTACCGCGGTAAAAAACAGAGTAGGAGAAGCAACCAGGGAGCTTTTCATGGCATTGAATTTTCTGATTTTCCGTATCCCATCAGCAAAAAAAGTTGCTCCTGTTGATGGCCAGTGTCATCCAATGACGGCGCAGGTCATGAGCTACCTCGCTTCTATTTGCAGGTCACAACAGACGTTGGAGCATATTTTACATGAATACCCCAAGATTGTTGATGGAGTTGGNTTATCTTTTTCATTCACAGTGCAGATTGAGCGGATAATGGTGCTGTTAGAGAGAAAATTGATAGAGAAGTCCAAAAAGTACAAGNACCCTGCTTTGCGCTATTTTTTCATGATGAATAATAGGAGGCACATAGAAGCTATGGATAAAATCTGGCAATTGGGAACCATTTTCGGCAATGATTGGTTCCGAAAAAACCAAGCAAAAACCCAGCAAGACCTTGAGCTTTATCAAAGAAGTTCATGGAGTGAGGTGATGGACTCTCCAAGGTTGGACAACAACGAGTCAGTAGAATCCAANGACAATGTAACAGAAGAATTATTGAAAGACAAGCTCAATTTGTTCAANAGGCACTTTGAGGAGATATCCAGGGTTCAGTCCACATGGTGTGTTTATGATAANAAGCTAAAGGAAGAAATAATAACATCCGTGGGAAACATGTTGCTGCCAGCATATGGAGTCNTCATNGGGAGGCTCAAGGATTTTCTTGGTAACCAGGCTTATAATTATATTGAATATGGAATGTTTGAGATTCAAGATCGACTCAACAATTTGTTCCTGGGAAACAATATAGTGGATCTTCCCAGCAAGGAGTTGGAACGACGTCCCCTCTTCTTTTCTCTGTTAAAGGTATGGAGATTCGTGGGTTTTGCTTCCACTTTTGTTGGATTGCTCTGTTATGCTCTCAGCTCTTCCTTCAACCACTTATTTGGNGAGTGGAATTTGTTGAAGATATCTCTTTACAGCGTTTTCAGTTCCATCATCTGTCTCATGATTTTGTTTGTAAGGATATGGCAACACTCTAGAAGTCACCGGTTCAAAGCCCATTCAGCATTTTTGGTGTTGACCATAACCTCAGTGTATTCCTTTTTCTCCGATAAGGTGATGAATGGGAAACCAGATNCATATANCCTCATTTCATGTGCTTCCTTTGCCATCATGTCACTAAGCTTGTCAAGGCTAACTCAATGCGGATTTGAAGTGGATCTCATGTACTTTTATCTCGGGTGTCTAATAATACAACTCATGAAGATTAAACTAGCGTTAGCTATTGTTGGAGCAGGTTACAGCTACTGCCTTATGATTCTTCGCTCTTCTTTCTCTTCCATAGATGAAAATGATTATCCTGTACTCGAAGATCAACGCGTACTCATTCAAGTCGATTCACAGCAACTAGCCAATACTATTCCTGATTTTTACAAAGGAGCTTCAGCTGAACAATTCGAATCTCTGAGGATACTGTTTCCCAGTGAGAGAAGACTCTGCGAAAGCGTCTTCTCGGGGATATCCTCTGCATCTGCATCTGACCTCTGTTTCTTAGAGATTTGCCGCGAAGCAACGACTCAGTTGCTGACTTACACCGATTCATTTGTAGATCAGAGCCGTTCGGTGTGGCATTTGTTTAAGGTCCTTGACGTGTTTGAGACAATGCGTGACCTGATTCCCGAATTCCAATCATTGTTTCCTGATTCATTAGTGAACGAAGCATTGAAAATAAAGAACAGATTGGGAGAAGTAAGCAGGGACACTTTCATGGAATTCGGAAATTTGGTCTTTCTTCATACTCCGGAGGCAGAGTTAGATGCTTGGGAAGACGGTGGGGTTCATCCAATGACTTGCGAGGCTACTTCATTCGAGCTTTCTGGTCAAGGCCAGTCCTGGACCAAGTTTTACGAGAATACCCTTTGGTTGCTGATGGAGTGGGAAAATCTTCTTCTTTCTCTGAGCAGATGGAGCGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01018	77621	84881	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006887 exocytosis

cellular_component
GO:0000145 exocyst

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001018s00028947.1	PF03081.10	Exo70	9	336	1.70E-55
Glyur001018s00028947.1	PF03081.10	Exo70	562	696	1.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.341
SRR1783600	control	1.307
SRR1783602	moderate drought stress	0.723
SRR1811619	moderate drought stress	0.729

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.778
DRR006520	Root Summer glycyrrhizin high producing strain	0.901
DRR006521	Root Winter glycyrrhizin high producing strain	0.738
DRR006522	Root Winter glycyrrhizin high producing strain	0.705
DRR006523	Root Summer glycyrrhizin low producing strain	1.213
DRR006524	Root Summer glycyrrhizin low producing strain	1.265
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.025
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.032

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.242
SRR2868004	Drought Stress (root)	1.157
SRR2967015	Control (root)	1.394

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.812
SRR9715740	Leaf	2.144
SRR9715741	Leaf	3.752
SRR9715739	Root	0.129
SRR9715742	Root	0.607
SRR9715743	Root	0.447

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.902
SRR8749028	MeJA induced 9h	3.377
SRR8749029	MeJA induced 9h	3.278
SRR8749030	Uninduced	4.161
SRR8749031	Uninduced	3.960
SRR8749032	Uninduced	3.374

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.744
SRR8400027	Control - Root	1.383