Gene detail information of Glyur001018s00028944 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58430.1 | 2.00E-144 | exocyst subunit exo70 family protein B1 |
| NR | XP_003615884.1 | 0 | Exocyst complex component [Medicago truncatula] |
| Swissprot | tr|Q9FGH9|E70B1_ARATH | 0 | Exocyst complex component EXO70B1 |
| trEMBL | tr|G7JZR6|G7JZR6_MEDTR | 0 | Exocyst subunit exo70 family protein {ECO:0000313|EMBL:AES98842.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01018 | 48094 | 59376 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001018s00028944.1 | PF03081.10 | Exo70 | 493 | 853 | 6.80E-90 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.374 |
| SRR1783600 | control | 3.251 |
| SRR1783602 | moderate drought stress | 2.395 |
| SRR1811619 | moderate drought stress | 2.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.418 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.486 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.464 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.710 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.584 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.491 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.205 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.280 |
| SRR2868004 | Drought Stress (root) | 1.412 |
| SRR2967015 | Control (root) | 2.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.640 |
| SRR9715740 | Leaf | 11.949 |
| SRR9715741 | Leaf | 11.268 |
| SRR9715739 | Root | 2.469 |
| SRR9715742 | Root | 2.890 |
| SRR9715743 | Root | 2.878 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.076 |
| SRR8749028 | MeJA induced 9h | 7.104 |
| SRR8749029 | MeJA induced 9h | 7.258 |
| SRR8749030 | Uninduced | 9.114 |
| SRR8749031 | Uninduced | 16.225 |
| SRR8749032 | Uninduced | 12.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.185 |
| SRR8400027 | Control - Root | 3.128 |