Gene detail

Gene detail information of Glyur001018s00028938

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	6.00E-123	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_003605840.1	0	NBS-LRR resistance-like protein 4G [Medicago truncatula]
COG	YP_007098670.1	3.00E-10	leucine-rich repeat (LRR) protein [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q40392\|TMVRN_NICGU	4.00E-127	TMV resistance protein N
trEMBL	tr\|G7JUR1\|G7JUR1_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:AES88037.1}

Sequence

Transcript Sequence

>Glyur001018s00028938.1
ATGAAAGGCGGATGTAGATGTTGCAGCGCTTCTTCTTCTGCTGGCTCTTCCTTGTTGCGGAAAAATGACGTGTTCATCAGCTTCAGAGGTGAAGACACACGCAGCAACTTCACCAGCCATCTTCACGCGGCCCTGTGCCGTAGCAAAATCAAAACCTACATCGATTACGAGCTTGTAAAGGGTGACCAGATCTCGGAAGCGCTCGCGAAGGCAATAGAGGATTCACACGTGTCGGTGGTGGTGTTCTCCGAAAACTATGCCTCCTCCACTTGGTGCCTTGACGAGCTCACCCACATCATGAATTGCAAAAAGCAGGAACAGAACAACCAGATCGTCGTACCTGTGTTCTACAACGTGGATCCGTCGCATGTACGGAAGCAGAGTGTTGGCAGCAGCTACGGGAATGCTTTTGAGAAGCACGTGCGTAATCCCAAGCACGTGATGAAGGTGAACCAGTGGCGAGAAGCTCTGGCTGAAGTAGCAAGTTTGGCGGGATGGGACTCTCGTAAATATAAACCTTTAGGCTCCGACGGTGGGTCGTGGTGGGATACCTCCAAAGACACTTTGACTCTCAAGTTAGAGATATTCCACCAAAGTGAGGGTAAGGATGCTACTCTTGTATCCTCGTGTGGTGGTACTAATGTCAGGAGTGGGGACCAGGGGATTGCATGTTGGTCTAGGTCAGGGCTTCATGTGGGCGAGTCAGGTTTGGGGTGGCCCATCCGAAGTTGGTTCTGGGTTTGCCCCAGGCATAGTGGGCCAAGCCCATTTCACACCAGCGGTGTGAATTCTTTCACAGGGTGTGAACGGATCTGGTTAAAGTTTGTTTTTCACACCTCGGACGTGAATTGCTTCCCAGTTGTGATCGCCTCTGGATTAGGAACAAATTTTTCACGTGTTGTGAATGGCCCTGCATTGCAAGTGGACACCCCACCACCCATCACACACCCCATTTCAATGAAGTGGGGGGAAGTGAGGGGTGTCCCATGGGTGCTTGAATCTGATCTCGTCGACGACATTGTCCAAGATGTGTTGCGAAAACTACAATATAAATATCCAAACGAATCTAAGGGTCTTATTGGAATTGACAAACACTGTGCACGCATTGAATCATTTCTGAGAAAAGGGTCAACAGAAGTTGGAATGATTGGAATTTGGGGTATGGGTGGCATCGGTAAGACAACCATTGCTGCAGCTACATTTGACAATTGCTCTTCTCAATTCGAAGGATGTTGTTTCTTGGAAAATGTAGGAGATGATTCAGACAAGCATGGATTGAAACATTTACGCAATAAACTTGTATCAGTGCTACTGGAGGAAGAAAATCTCCATATGGGCTCAGTCAGATCCGGTTCTAGTTTTTGTAAGAGCAGGCTTAGTCATAAGAAAGTTCTCATTGTGCTTGATGATCTAAGAACTCCACAGCAACTAGATTATCTAGTTGGAGAGCATTCTTGCTTCTTGGGACCAGGGAGCAGAGTCATTCTTACAACTAGAGATAAACATGTGCTTAACAGAGCTGATGAAATTTATGAGGTGAAGCCAATGAACTTTCATGAATCTCTTCAGCTTTTCAGTTTAAATGCTTTCAACAAAGTCCACCAAGATATTGGTTATGAAAAGCTATCAGAAAGTGTGGTCATTTATGCAGATGGCATTCCATTAGCTCTGAAAGTTTTAGGCTCATTGTTTTGTTCCAAAAGTAAAGAAGTTTGGCTAGGTACAATGACAAAACTCAAGAAAATTCCCTGTAAAGAAATTCAGAACATCTTAAGACTGAGTTATGATGGCTTAGATGATACAGAGAAAGAAATATTTCTGGACATTGCAAGCTTCTTTAATGGAGAGGATAGGCAACATGTGACGAGACTATTGGATGCCTGCGGCTTCTATGCCAGTGCTGGTGTAGAGACCCTTTTGGAGAAGTGTCTAATTACTATTTCAAATAACAATGAAATACAAATGCATGCCTTGATACAAGAAATGGGCTGGGAAATTGTTCGCCAAGAATCTACTAAAGACCCTGGGAAACGGAGTCGATTGTATGATCGTGAGGAAGTTTACGATGTGTTGAAAAATAACACGGGCACTAGTGCAATTGAAGGCATGAGCATGGATGTGTCACAAATTAGAGGAATGAAATTGAGCTCTGACATTTTTGCCAAGATGATTAGCCTAAGATTTCTCAGGTTCTACTCTCGTTGGGGTGAGAGATGTAATGTTTCCCTTCCTGCTGGTCTTGAGTCATTGTCTAATAAATTAAGGTATCTCCATTGGAGTGCATATCCTTTGGAGTCTCTACCATCAACTTTTTCTCCTGAGAAACTTGTTGAGCTTTCCATGCCAAACAGTCATGTTCAAAGACTATGGGAAGGAGTCCAGGATCTTGCTAACTTACAGAAATTGGATCTCAGCTGTTCTGAACACTTGATTCAGCTTCCAGATTTCTCCATGGCTCCAAATCTTCAAAGCATTAACCTCTATGGATGTGCAAGGCTGCGTCAGGTTCACCCATCTATTTTATCTCTCAAAAAGCTTGTCAATTTGAACCTGGTTTGGTGCAAAAGGCTCAAGAGTCTTCTCAGCAATGCCCCTTCTCTCAGAATTCTCGAGCTCTATGGCTGCTCAAGTCTCAAGGAATTTTCGGTGACATCGAAAGAAATGACATACTTGGACTTGAGAAGTACCGCGATTAATGAATTGCCATCATCCATTAAGAACCTTGGTAATCTCATGAGCTTGGAGCTAAGTTGCTGTGGTCGCCTTAGGAATCTTCCAAATGAGTTCTCATGCCTTAGATCTCTTGGCAGGCTGGTACTTTCTGATTGCACTCAACTTGACACATCTAATCTGAATTTTCTATTCGACGGCCTGCGTTCTTTGGGATACCTGTGTCTTGACAACTGTTGTAACCTAACTGAACTCCCTGACAACATAAGCTTGTTATCATCATTGTACTATCTATCACTGAGTGGAAGCAGTGTGGACAACATGCCTGCAAGCATCAAGCACCTTTCACAGCTAGAAACTCTTGACTTGTGCAAATGCATGAGGATTCAGTCTCTACCAGAACTCCCACCATCCATTGAAGTGTTGGATGTCACTAACTGCACCTCCTTGGAGACAGTGTTCACCTCTCCTGTCATTGATGAGCTGCTTCAAGAGCACAAGGTGTTCATTTCCTTCAAGAACTGTGTGAGATTGAGTGAACATTCCCTCAATGCTATTATGACAGATGCCCATGTAAGAATAAAGGAGGTAGCATATGTTCATGTATCAGCAATGATAGAAAGGAGTGACCCTTGTTACCTTTTCAAGTCAGAGCTGATGCCATCCTATCATCATCCACCAACTGTTATTTTCCCAGGTAGTAGAGTTCCGGACTGGTTTCACTATCGGTCGACTAAGGCATCGATAACAATCGAACTCTCACATTCTCCACAATCCAACATATGTGGTTTCATTTTCTGCCTCATTCTACCTCCATCCTCATCAAATGAAAGTAATTGCAATTGGAAAATTGGATGTGAATGCTACTTGGAAGGTGGTGAAAGGATCAGAAACACAAGTATGTGCTCTTTTGCCACAGGGTTGGTTTCAGATCATGTGTACTTATGGTATGATGAAAGTTTTTGTCTTGACATGTTTGATACAATTGTTGAAAGTAGAACCAAGGATCAGTTCACAACTTATAACCCGAAGCTCTCATTTCAATTCTTTGTTGAAACTGAGGATAAGTTGAATGCGGTGATTAAGGAGTGTGGGATCTGCCAAATATATGGAACTCAAGTTGAAGGCTGTTATGAGTATGAAGATGAACAAGCAGATGCATTTCATCAAAGAAAGAAACAGAAGGTGAGACATATCCACTTCGAAGGAAAATTAGGTGCTGATTATATGGCTAAAAATTTGAGTGAGGCACCAGTGAGAAAAAAGACCAATGTTGATTCGTGGTGCTATGGAGTTGACACTCCTTCCCGGTAA

Protein Sequence

>Glyur001018s00028938.1
MKGGCRCCSASSSAGSSLLRKNDVFISFRGEDTRSNFTSHLHAALCRSKIKTYIDYELVKGDQISEALAKAIEDSHVSVVVFSENYASSTWCLDELTHIMNCKKQEQNNQIVVPVFYNVDPSHVRKQSVGSSYGNAFEKHVRNPKHVMKVNQWREALAEVASLAGWDSRKYKPLGSDGGSWWDTSKDTLTLKLEIFHQSEGKDATLVSSCGGTNVRSGDQGIACWSRSGLHVGESGLGWPIRSWFWVCPRHSGPSPFHTSGVNSFTGCERIWLKFVFHTSDVNCFPVVIASGLGTNFSRVVNGPALQVDTPPPITHPISMKWGEVRGVPWVLESDLVDDIVQDVLRKLQYKYPNESKGLIGIDKHCARIESFLRKGSTEVGMIGIWGMGGIGKTTIAAATFDNCSSQFEGCCFLENVGDDSDKHGLKHLRNKLVSVLLEEENLHMGSVRSGSSFCKSRLSHKKVLIVLDDLRTPQQLDYLVGEHSCFLGPGSRVILTTRDKHVLNRADEIYEVKPMNFHESLQLFSLNAFNKVHQDIGYEKLSESVVIYADGIPLALKVLGSLFCSKSKEVWLGTMTKLKKIPCKEIQNILRLSYDGLDDTEKEIFLDIASFFNGEDRQHVTRLLDACGFYASAGVETLLEKCLITISNNNEIQMHALIQEMGWEIVRQESTKDPGKRSRLYDREEVYDVLKNNTGTSAIEGMSMDVSQIRGMKLSSDIFAKMISLRFLRFYSRWGERCNVSLPAGLESLSNKLRYLHWSAYPLESLPSTFSPEKLVELSMPNSHVQRLWEGVQDLANLQKLDLSCSEHLIQLPDFSMAPNLQSINLYGCARLRQVHPSILSLKKLVNLNLVWCKRLKSLLSNAPSLRILELYGCSSLKEFSVTSKEMTYLDLRSTAINELPSSIKNLGNLMSLELSCCGRLRNLPNEFSCLRSLGRLVLSDCTQLDTSNLNFLFDGLRSLGYLCLDNCCNLTELPDNISLLSSLYYLSLSGSSVDNMPASIKHLSQLETLDLCKCMRIQSLPELPPSIEVLDVTNCTSLETVFTSPVIDELLQEHKVFISFKNCVRLSEHSLNAIMTDAHVRIKEVAYVHVSAMIERSDPCYLFKSELMPSYHHPPTVIFPGSRVPDWFHYRSTKASITIELSHSPQSNICGFIFCLILPPSSSNESNCNWKIGCECYLEGGERIRNTSMCSFATGLVSDHVYLWYDESFCLDMFDTIVESRTKDQFTTYNPKLSFQFFVETEDKLNAVIKECGICQIYGTQVEGCYEYEDEQADAFHQRKKQKVRHIHFEGKLGADYMAKNLSEAPVRKKTNVDSWCYGVDTPSR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01018	26003	32275	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001018s00028938.1	PF01582.15	TIR	24	158	3.30E-36
Glyur001018s00028938.1	PF00931.17	NB-ARC	363	632	4.10E-39
Glyur001018s00028938.1	PF07725.7	LRR_3	775	794	7.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.127
SRR1783600	control	2.030
SRR1783602	moderate drought stress	3.215
SRR1811619	moderate drought stress	3.242

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.739
DRR006520	Root Summer glycyrrhizin high producing strain	1.826
DRR006521	Root Winter glycyrrhizin high producing strain	1.484
DRR006522	Root Winter glycyrrhizin high producing strain	1.520
DRR006523	Root Summer glycyrrhizin low producing strain	1.948
DRR006524	Root Summer glycyrrhizin low producing strain	1.757
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.009
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.034

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.118
SRR2868004	Drought Stress (root)	3.550
SRR2967015	Control (root)	4.315

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.162
SRR9715740	Leaf	1.344
SRR9715741	Leaf	1.031
SRR9715739	Root	0.227
SRR9715742	Root	1.550
SRR9715743	Root	0.875

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.699
SRR8749028	MeJA induced 9h	0.658
SRR8749029	MeJA induced 9h	0.768
SRR8749030	Uninduced	0.589
SRR8749031	Uninduced	0.397
SRR8749032	Uninduced	0.442

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.880
SRR8400027	Control - Root	3.060