Gene detail

Gene detail information of Glyur001018s00028933

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30210.1	0	laccase 3
NR	XP_007142103.1	0	hypothetical protein PHAVU_008G252800g [Phaseolus vulgaris]
COG	YP_005092656.1	4.00E-28	copper-resistance protein, CopA family protein [Oceanimonas sp. GK1]
Swissprot	tr\|Q56YT0\|LAC3_ARATH	0	Laccase-3 (Precursor)
trEMBL	tr\|V7B875\|V7B875_PHAVU	0	Laccase {ECO:0000256\|RuleBase:RU361119}

Sequence

Transcript Sequence

>Glyur001018s00028933.1
ATGAAGACTATCAACCTCCCTGGCAAGTCATGTTGCATATGCTTCTTACTTGGCCTAGTTACTCTTATTGCTTCTGCTTCCCTTGCTTGGCCAATACCATCTCATTACCATGAATTTGTTGTTCAAACTGCGCCAGTGAAGAGGCTGTGCAGAACTCAAAACATACTCACTGTGAATGGGCAGTTTCCTGGCCCAACGGTGGAAGTTAGAAACGGAGATTCTGTTGCAATCAAAGTAACAAATGCTGGACCTTACAACATCTCCATCCACTGGCATGGGTTAAGGATGTTGAGAAATCCATGGGCAGATGGGCCTACTTATGTGACTCAATGTCCCATCCAACCAGGGGGAAGTTACACATACCGCTTTACAATCCAAAACCAAGAAGGGACACTATGGTGGCATGCTCACACTGGCTTCCTAAGAGCCACTGTCTATGGAGCTTTCATCATTTATCCAAAACTGGGTTCTCCTTATCCCTTCTCTATGCCTAAGAAAGAATTTCCACTCCTCCTCGGGGAATGGTTTGACAGGGATCCAATGGTTCTCTTAAGGCAAACACAATTCACAGGAGCAGCTCCAAATGTATCTGTTGCATACACCATTAATGGTCAACCTGGAGATCTCTACAGATGTTCCAGAACCGTACGTGTTCCAGTGGATAATGGGGAGACAATTCTCTTGAGGATCATCAACAGTGCACTNAACCAAGAGCTCTTCTTCTCAATTGCCAACCACAGGATGACGGTGGTCGGCACCGATGCAGCATACACCAAGCCACTAACCNCCAACGTCCTCATGATAGGCCCAGGCCAAACCATCAACGTCCTCGTCACCGCCGACCAAACCCCAGGCCGTTACTACATGGCGGCGCGTGCCTACCAAACAGCCATGAATGCCGCCTTCGACAACACCACCACCACCGCAATCCTCGAATACAAATCCGCCAGTTGCGGCAACAGAAGAAAAGGACAACCACCTCCAACTCCAATAAGACCCATATTACCAATTTTGCCAGCTTTCAACGACACAAACACCGCGAACGCATTCACATCAGGGATCAGGGGTCTTTCCAAAATTAGAGTTTTTCAAAAGGTTGATGTGAGTCTTTTGTACGCGGTTGGGTTGGGACTAATCAACTGCACGAATCCCAATAGTCCACGGTGTCAAGGACCAAACGGGACCCGATTCACTGCGAGCATAAACAACAACTCCTTTGTGCTCCCTACAACCACTTCCTTAATGCAAGCCTACTATCAGGGTATTCCTGGTGTCTTCACAACGGATTTTCCTCCGGTTCCTCCTCTACAGTTCAACTATACGGGGAACGTGCCACGTGGNCTTTGGACACCATCACGTGGGACTAGGCTCATGAAGGTGAAATTTGGTTCCAANGTGCAGATTGTTTTCCAGGATACTAGTATTGTGACAACGGAGGACCACCCCATGCATATTCATGGGTTCCATTTCTTTATTGTTGGTGCGGGTTTTGGTAACTTCAACCCAGCAACTGACCCTGCAAGGTTCAACCTTGTGGACCCACCTGTGAGAAACACCATTGGAACACCTCCTGGAGGATGGGAATTTGGTTCTTGCATTGTCACATAGATTCNCATCTCAATTGGGGTCTGGCAAATGCACTTTTGGTAGAAAATGGAGTTGGCCCATCACAGTCAGTGATACCTCCACCACCAGATCTACCACGATGCTGAGATGAAGAGAGAAAGAAAGCATCATTATTAGTCCTAATTAAATTTTATGTTCCTCATCAATTATTGGCTTCTTGTTGTTTTACTGGGTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01018	1255	4684	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0046274 lignin catabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0048046 apoplast

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

GO:0052716 hydroquinone:oxygen oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001018s00028933.1	PF07732.10	Cu-oxidase_3	41	154	8.90E-45
Glyur001018s00028933.1	PF00394.17	Cu-oxidase	167	315	2.40E-40
Glyur001018s00028933.1	PF07731.9	Cu-oxidase_2	430	527	1.30E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	57.786
SRR1783600	control	58.670
SRR1783602	moderate drought stress	70.813
SRR1811619	moderate drought stress	70.846

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.741
DRR006520	Root Summer glycyrrhizin high producing strain	5.825
DRR006521	Root Winter glycyrrhizin high producing strain	0.071
DRR006522	Root Winter glycyrrhizin high producing strain	0.120
DRR006523	Root Summer glycyrrhizin low producing strain	5.874
DRR006524	Root Summer glycyrrhizin low producing strain	6.077
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.642
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.644

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	254.850
SRR2868004	Drought Stress (root)	107.180
SRR2967015	Control (root)	120.918

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.492
SRR9715740	Leaf	0.456
SRR9715741	Leaf	2.270
SRR9715739	Root	126.668
SRR9715742	Root	64.723
SRR9715743	Root	76.216

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.818
SRR8749028	MeJA induced 9h	4.985
SRR8749029	MeJA induced 9h	4.252
SRR8749030	Uninduced	7.216
SRR8749031	Uninduced	3.069
SRR8749032	Uninduced	4.145

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	230.990
SRR8400027	Control - Root	191.258