Gene detail

Gene detail information of Glyur001017s00031780

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G23910.1	2.00E-76	ATP binding microtubule motor family protein
NR	XP_003549039.2	0	PREDICTED: kinesin-like protein KIF22-like [Glycine max]
Swissprot	tr\|Q0DV28\|ARK1_ORYSJ	3.00E-29	Armadillo repeat-containing kinesin-like protein 1
trEMBL	tr\|I1MPL7\|I1MPL7_SOYBN	0	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur001017s00031780.1
ATGGCTTCGACCCAATTCGACGTCGCAGGTAATTCCAACCCGGTTCGGAAAGTTCGGGTCGTGGCAAAGATCCGGGGATTTTCGGGTCCCGAGACCAATTCCGGAACTTCAAGAACTGTGGATTGGGTTTCGGTGAACCGGGAAAACCCGGAGGATGTCACCATCTCCTTCAAAGAGCAATCTTCGAGTCGGTATTTGGTGGACTATTGCTATAACGAACGTGAAGAGAATGAGATTATTTATTCAAGGGAGGTGAAGCCTCTTGTTTCAGCGGTTTTTGAAGGTCATAACAGCACTGTTATTGCTCATGGAGCTAGAGGCAGTGGAAAGACTCACATGATTCAGGGCTCTTTTGAGAGACCGGGTTTGGCGGTGCTGGCTACTTCTGAGTTTCTGTCTATGGCTGAGAAAAATGGGAAATCCATAGCAGTTTCTTTCTATGAGGTTGATCACCAGGACCGTGCTGTTGATTTATTGAATCCAGAACAACCACAAATATTAGTGCTTGAAGATCGCGGAAAAATTCAGTTTAAAGGACTCACTCAGGTTCCTGTAAAATCCATTGCTCAGTTTCAGAATTTATACTCCACTGCATGTTCTGCACAGAATGCTGCTCCCAGAAAAGGCTATGAGCGTGCTCGTAGGAGCCACATGGGATTGATTGTGCATGTCTTTTCCCACAGTGAAAGTGTTGGATGTCCTGTGAGCAAAATGAATTTTGTTGATATGGCAGGTTATGAAGATACCAGAAAGAAGAGTACTGATGGCTCTGATCTTGCTGAGACTAGTAAAATCAACAAGTCAATTTATGCATTGCTGAACGTTTGTCATGCTCTCAGCACAAATGAAACTCATGTTCCTTACCGGGAAAGCAAACTCACACGCATATTGCAAGATTCCTTGAGGGCAACTAGCAAAATTTTGTTGGTTTCCTGTTTGAACCCATCATTTTGCCAAGACACAATTTACATGGTAAGGTTAGCATCACGCTCATGTCAATACATCCACCGGACACCCTTAGATTCCATGAAGAAAGGTGTAAGTTTAGTGAGACAGACGGTGACTTCTCACAAGAACCCAATACCGAAAAATGTCTCTGGAACATCAAAGAAATTAACAGGTTCCAAATCTCATATATATGAAAAGAAATCTGCTGTTGCTGCAAAGTCNGCATTGAAAGCAAGGAAATTGTTTGATGAAACCAGCCATTCTGCTACTAGAGCTGAGAAGGTATGCTTTTCTGTATACTATTTTTTCTCTGAAATTTCCATTGCCCATGTTACCGAAGCACCAGAGCCTTTATTGGACAATTTATCATCAGAAGCTGGAAATCAGGTCGAACAAAACTCTAGAGAGGAAAAGGATAATTCATTTCTAGATCCTAGTAATAATGCCAAACTCGATATGATGAAGGAAAATGATAATTCTTTTCCAGATGCTACTAATAATGCCAAACTCAATATGGTGAAGGAAAATGATGACTCATCTTTGAATGCTAGCAGTGAAGTGGAACTTGATCTCATAGTGGGAAAGGTTGTTTCTGAGGATAAAGAGGATCATCAAGAGAAACATACCCCTTGTGCCACTAATTACTCCAATGCTTTGTCAATAGTTGATGAAGGTCATAACATGAACAAGGAGAACAACATCTTAATGGCAAATGGAGATGGCTCACCATCCATTACTGCTCAAATACGCGATGTTTATAACACTCTTAAATGGATGCATTCATCAACTCTATTATGCACACAGATGCCAGAGAAGGAATGCACTTCACTTGCTGAAATTGCAGAACCAAGAACTCCTGTAATTGCAGAATCTACCCATGACATTCTAACAAAGAAATGCGTTTCACTTGATGATCAGATGCCAGCTGAAATTGTAGAACCAAGAACCCCTGTAAATGAACAAAATATGTGCTTCAATGAAAGACGAGATGTAATGAATGCCAAAAGTCCTTGGGAAACATTCAGCATGCGTAGTTCTGGCATGAAGAATTCTATTGTTCAAGAATACCTTAGGTTTTTAAACACAGCTGACAAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01017	69472	74219	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001017s00031780.1	PF00225.18	Kinesin	24	330	4.70E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.937
SRR1783600	control	1.968
SRR1783602	moderate drought stress	1.435
SRR1811619	moderate drought stress	1.393

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.218
DRR006520	Root Summer glycyrrhizin high producing strain	3.018
DRR006521	Root Winter glycyrrhizin high producing strain	0.054
DRR006522	Root Winter glycyrrhizin high producing strain	0.025
DRR006523	Root Summer glycyrrhizin low producing strain	0.467
DRR006524	Root Summer glycyrrhizin low producing strain	0.577
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.437
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.482

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.010
SRR2868004	Drought Stress (root)	3.079
SRR2967015	Control (root)	4.026

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.664
SRR9715740	Leaf	0.191
SRR9715741	Leaf	0.522
SRR9715739	Root	0.521
SRR9715742	Root	0.825
SRR9715743	Root	1.088

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.508
SRR8749028	MeJA induced 9h	4.103
SRR8749029	MeJA induced 9h	4.623
SRR8749030	Uninduced	0.047
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.218

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.732
SRR8400027	Control - Root	5.584