Gene detail information of Glyur001016s00027707 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70950.1 | 3.00E-31 | TPX2 (targeting protein for Xklp2) protein family |
| NR | KHN32244.1 | 0 | hypothetical protein glysoja_039270 [Glycine soja] |
| Swissprot | tr|Q8GYX9|WDL1_ARATH | 2.00E-07 | Protein WVD2-like 1 |
| trEMBL | tr|K7N0Q8|K7N0Q8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G01745.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01016 | 83910 | 89647 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001016s00027707.1 | PF06886.6 | TPX2 | 462 | 507 | 4.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.339 |
| SRR1783600 | control | 4.309 |
| SRR1783602 | moderate drought stress | 3.206 |
| SRR1811619 | moderate drought stress | 3.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.359 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.351 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.850 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.857 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.481 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.645 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.011 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.222 |
| SRR2868004 | Drought Stress (root) | 19.280 |
| SRR2967015 | Control (root) | 19.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.265 |
| SRR9715740 | Leaf | 4.895 |
| SRR9715741 | Leaf | 6.357 |
| SRR9715739 | Root | 0.428 |
| SRR9715742 | Root | 0.970 |
| SRR9715743 | Root | 1.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.969 |
| SRR8749028 | MeJA induced 9h | 13.060 |
| SRR8749029 | MeJA induced 9h | 7.550 |
| SRR8749030 | Uninduced | 13.791 |
| SRR8749031 | Uninduced | 6.897 |
| SRR8749032 | Uninduced | 4.843 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.175 |
| SRR8400027 | Control - Root | 15.200 |